Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09960

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09955 and SGL_RS09960 are separated by 108 nucleotidesSGL_RS09960 and SGL_RS09965 are separated by 31 nucleotides SGL_RS09955: SGL_RS09955 - cation-transporting P-type ATPase, at 1,713,409 to 1,716,270 _RS09955 SGL_RS09960: SGL_RS09960 - photosystem I assembly protein Ycf3, at 1,716,379 to 1,716,900 _RS09960 SGL_RS09965: SGL_RS09965 - GTP-binding protein, at 1,716,932 to 1,718,293 _RS09965 Position (kb) 1716 1717Strain fitness (log2 ratio) -3 -2 -1 0 1at 1715.489 kb on - strand, within SGL_RS09955at 1715.597 kb on + strand, within SGL_RS09955at 1715.629 kb on - strand, within SGL_RS09955at 1715.637 kb on - strand, within SGL_RS09955at 1715.657 kb on + strand, within SGL_RS09955at 1715.701 kb on - strand, within SGL_RS09955at 1715.732 kb on + strand, within SGL_RS09955at 1715.771 kb on + strand, within SGL_RS09955at 1715.918 kb on + strand, within SGL_RS09955at 1715.931 kb on + strand, within SGL_RS09955at 1715.939 kb on - strand, within SGL_RS09955at 1715.946 kb on - strand, within SGL_RS09955at 1715.946 kb on - strand, within SGL_RS09955at 1715.946 kb on - strand, within SGL_RS09955at 1715.953 kb on + strand, within SGL_RS09955at 1715.956 kb on - strand, within SGL_RS09955at 1715.961 kb on - strand, within SGL_RS09955at 1716.008 kb on - strandat 1716.011 kb on - strandat 1716.088 kb on - strandat 1716.115 kb on + strandat 1716.146 kb on - strandat 1716.179 kb on + strandat 1716.340 kb on + strandat 1716.384 kb on - strandat 1716.928 kb on - strandat 1716.934 kb on + strandat 1716.974 kb on + strandat 1717.016 kb on + strandat 1717.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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1,715,489 - SGL_RS09955 0.73 +0.1
1,715,597 + SGL_RS09955 0.76 -0.1
1,715,629 - SGL_RS09955 0.78 -0.5
1,715,637 - SGL_RS09955 0.78 +0.0
1,715,657 + SGL_RS09955 0.79 +0.0
1,715,701 - SGL_RS09955 0.80 -0.0
1,715,732 + SGL_RS09955 0.81 -0.4
1,715,771 + SGL_RS09955 0.83 -0.1
1,715,918 + SGL_RS09955 0.88 -0.0
1,715,931 + SGL_RS09955 0.88 -0.0
1,715,939 - SGL_RS09955 0.88 -0.3
1,715,946 - SGL_RS09955 0.89 +0.8
1,715,946 - SGL_RS09955 0.89 +0.2
1,715,946 - SGL_RS09955 0.89 -0.2
1,715,953 + SGL_RS09955 0.89 +0.3
1,715,956 - SGL_RS09955 0.89 +0.1
1,715,961 - SGL_RS09955 0.89 -0.2
1,716,008 - +0.1
1,716,011 - -0.3
1,716,088 - -0.5
1,716,115 + -0.7
1,716,146 - -0.4
1,716,179 + -0.0
1,716,340 + -0.1
1,716,384 - -2.1
1,716,928 - -0.0
1,716,934 + -0.6
1,716,974 + -1.3
1,717,016 + -2.2
1,717,028 + -2.9

Or see this region's nucleotide sequence