Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06305

Experiment: Cobalt chloride 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06300 and SGL_RS06305 are separated by 415 nucleotidesSGL_RS06305 and SGL_RS06310 are separated by 245 nucleotides SGL_RS06300: SGL_RS06300 - hypothetical protein, at 940,638 to 941,270 _RS06300 SGL_RS06305: SGL_RS06305 - photosystem I core protein PsaA, at 941,686 to 943,941 _RS06305 SGL_RS06310: SGL_RS06310 - photosystem I core protein PsaB, at 944,187 to 946,382 _RS06310 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -1 0 1at 940.687 kb on - strandat 940.755 kb on - strand, within SGL_RS06300at 940.757 kb on + strand, within SGL_RS06300at 940.757 kb on + strand, within SGL_RS06300at 940.765 kb on - strand, within SGL_RS06300at 941.007 kb on + strand, within SGL_RS06300at 941.050 kb on - strand, within SGL_RS06300at 941.050 kb on - strand, within SGL_RS06300at 941.108 kb on + strand, within SGL_RS06300at 941.524 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 5 uM
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940,687 - +0.4
940,755 - SGL_RS06300 0.18 +0.2
940,757 + SGL_RS06300 0.19 +0.5
940,757 + SGL_RS06300 0.19 -0.1
940,765 - SGL_RS06300 0.20 -0.4
941,007 + SGL_RS06300 0.58 +0.0
941,050 - SGL_RS06300 0.65 +0.5
941,050 - SGL_RS06300 0.65 +0.6
941,108 + SGL_RS06300 0.74 -0.0
941,524 - -0.0

Or see this region's nucleotide sequence