Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02940 and SGL_RS02945 are separated by 81 nucleotides SGL_RS02945 and SGL_RS02950 overlap by 4 nucleotides SGL_RS02950 and SGL_RS02955 are separated by 66 nucleotides SGL_RS02955 and SGL_RS02960 overlap by 1 nucleotides
SGL_RS02940: SGL_RS02940 - magnesium chelatase ATPase subunit D, at 232,008 to 234,038
_RS02940
SGL_RS02945: SGL_RS02945 - hypothetical protein, at 234,120 to 234,308
_RS02945
SGL_RS02950: SGL_RS02950 - hypothetical protein, at 234,305 to 234,838
_RS02950
SGL_RS02955: SGL_RS02955 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 234,905 to 236,356
_RS02955
SGL_RS02960: SGL_RS02960 - alanine dehydrogenase, at 236,356 to 237,438
_RS02960
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 234.086 kb on + strand at 234.094 kb on - strand at 235.058 kb on - strand, within SGL_RS02955 at 235.279 kb on + strand, within SGL_RS02955 at 236.104 kb on + strand, within SGL_RS02955 at 236.238 kb on - strand at 236.378 kb on - strand at 236.473 kb on + strand, within SGL_RS02960 at 236.568 kb on - strand, within SGL_RS02960 at 236.692 kb on + strand, within SGL_RS02960 at 236.727 kb on - strand, within SGL_RS02960 at 236.776 kb on + strand, within SGL_RS02960 at 236.799 kb on + strand, within SGL_RS02960 at 236.836 kb on + strand, within SGL_RS02960 at 236.862 kb on + strand, within SGL_RS02960 at 236.862 kb on + strand, within SGL_RS02960 at 236.895 kb on + strand, within SGL_RS02960 at 236.925 kb on - strand, within SGL_RS02960 at 237.008 kb on + strand, within SGL_RS02960 at 237.118 kb on + strand, within SGL_RS02960 at 237.199 kb on + strand, within SGL_RS02960 at 237.236 kb on + strand, within SGL_RS02960 at 237.306 kb on + strand, within SGL_RS02960 at 237.326 kb on - strand, within SGL_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 234,086 + -0.2 234,094 - +0.2 235,058 - SGL_RS02955 0.11 -5.2 235,279 + SGL_RS02955 0.26 -5.7 236,104 + SGL_RS02955 0.83 -3.9 236,238 - -5.1 236,378 - -0.2 236,473 + SGL_RS02960 0.11 +0.1 236,568 - SGL_RS02960 0.20 +0.5 236,692 + SGL_RS02960 0.31 +0.1 236,727 - SGL_RS02960 0.34 +0.4 236,776 + SGL_RS02960 0.39 -0.5 236,799 + SGL_RS02960 0.41 +0.1 236,836 + SGL_RS02960 0.44 +0.1 236,862 + SGL_RS02960 0.47 -0.5 236,862 + SGL_RS02960 0.47 -0.2 236,895 + SGL_RS02960 0.50 -0.1 236,925 - SGL_RS02960 0.53 +0.4 237,008 + SGL_RS02960 0.60 -0.1 237,118 + SGL_RS02960 0.70 +0.0 237,199 + SGL_RS02960 0.78 +0.4 237,236 + SGL_RS02960 0.81 -0.0 237,306 + SGL_RS02960 0.88 +0.4 237,326 - SGL_RS02960 0.90 +0.5
Or see this region's nucleotide sequence