Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17375

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
3,265,380	+		LU632_RS17360	0.81	+0.4
3,265,381	-		LU632_RS17360	0.81	-0.2
3,265,402	-		LU632_RS17360	0.82	-0.2
3,265,402	-		LU632_RS17360	0.82	+1.3
3,265,798	-		LU632_RS17365	0.12	-0.7
3,265,800	+		LU632_RS17365	0.12	+2.2
3,265,849	-		LU632_RS17365	0.30	-0.1
3,266,151	-				+0.7
3,266,157	-				-0.9
3,266,204	+		LU632_RS17370	0.26	-1.9
3,266,243	-		LU632_RS17370	0.45	+3.5
3,266,347	-				+1.3
3,266,358	+				+1.1
3,266,358	+				-2.1
3,266,361	+				+0.2
3,266,365	-				+0.8
3,266,429	+		LU632_RS17375	0.11	-1.0
3,266,475	-		LU632_RS17375	0.19	+0.6
3,266,658	+		LU632_RS17375	0.48	-1.0
3,266,658	+		LU632_RS17375	0.48	-1.5
3,266,659	-		LU632_RS17375	0.49	-0.3
3,266,659	-		LU632_RS17375	0.49	-1.3
3,266,756	+		LU632_RS17375	0.64	-0.4
3,266,757	-		LU632_RS17375	0.65	-1.2
3,266,757	-		LU632_RS17375	0.65	-0.4
3,266,757	-		LU632_RS17375	0.65	+0.8
3,266,850	+		LU632_RS17375	0.80	-1.7
3,266,850	+		LU632_RS17375	0.80	-0.4
3,266,850	+		LU632_RS17375	0.80	-0.2
3,266,851	-		LU632_RS17375	0.80	-1.4
3,266,851	-		LU632_RS17375	0.80	+0.8
3,266,861	+		LU632_RS17375	0.81	+0.2
3,266,861	+		LU632_RS17375	0.81	-0.7
3,266,862	-		LU632_RS17375	0.82	-1.5
3,266,862	-		LU632_RS17375	0.82	+0.7
3,266,862	-		LU632_RS17375	0.82	-0.2
3,266,862	-		LU632_RS17375	0.82	-0.2
3,266,862	-		LU632_RS17375	0.82	+0.0
3,266,862	-		LU632_RS17375	0.82	-1.5
3,266,954	-				-0.2
3,266,957	+				-0.3
3,266,957	+				-3.5
3,266,976	+				+1.2
3,266,976	+				-2.0
3,266,983	-				+2.2
3,266,983	-				+1.7
3,266,999	+				+0.7
3,267,077	-		LU632_RS17380	0.17	+0.5
3,267,225	+		LU632_RS17380	0.58	-0.2
3,267,226	-		LU632_RS17380	0.59	-2.1
3,267,226	-		LU632_RS17380	0.59	-0.2
3,267,227	+		LU632_RS17380	0.59	-1.5
3,267,228	-		LU632_RS17380	0.59	+0.3
3,267,228	-		LU632_RS17380	0.59	+1.9
3,267,228	-		LU632_RS17380	0.59	+0.3
3,267,228	-		LU632_RS17380	0.59	+2.4
3,267,248	-		LU632_RS17380	0.65	-2.5
3,267,291	+		LU632_RS17380	0.77	+0.3
3,267,291	+		LU632_RS17380	0.77	-2.2
3,267,291	+		LU632_RS17380	0.77	-0.8
3,267,292	-		LU632_RS17380	0.77	+0.6
3,267,326	-		LU632_RS17380	0.87	+2.2
3,267,377	+				-0.4
3,267,398	+				+0.9
3,267,399	-				+0.8
3,267,419	+				-0.2
3,267,420	-				-2.5
3,267,422	-				-2.7
3,267,525	-				-0.3
3,267,604	+				+0.7
3,267,649	+		LU632_RS17385	0.11	+2.7
3,267,692	-		LU632_RS17385	0.26	+0.5
3,267,692	-		LU632_RS17385	0.26	-2.2
3,267,747	-		LU632_RS17385	0.45	-2.6
3,267,795	-		LU632_RS17385	0.62	+1.0
3,267,833	-		LU632_RS17385	0.75	-0.1
3,267,834	+		LU632_RS17385	0.76	-1.5
3,267,880	-				-1.0
3,267,937	+				+0.8
3,267,947	-				-0.4
3,267,973	+				+0.2