Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06930

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,325,600	+				+0.8
1,325,601	-				-0.2
1,325,601	-				+2.0
1,325,601	-				-1.7
1,325,601	-				-0.3
1,325,601	-				+0.4
1,325,604	+				+1.8
1,325,605	-				-0.4
1,325,658	+		LU632_RS06915	0.16	+0.8
1,325,709	-		LU632_RS06915	0.39	-2.7
1,325,709	-		LU632_RS06915	0.39	-0.7
1,325,719	-		LU632_RS06915	0.44	-0.9
1,325,740	+		LU632_RS06915	0.53	+0.5
1,325,741	-		LU632_RS06915	0.53	+0.7
1,325,741	-		LU632_RS06915	0.53	+2.4
1,326,051	+				-2.3
1,326,051	+				+0.2
1,326,051	+				+1.2
1,326,052	-				-0.1
1,326,052	-				-0.1
1,326,052	-				+1.2
1,326,052	-				+0.6
1,326,052	-				+1.2
1,326,052	-				-0.7
1,326,136	+				+0.6
1,326,143	-				-2.5
1,326,143	-				-4.2
1,326,157	+				+2.1
1,326,247	+		LU632_RS06925	0.21	+1.2
1,326,247	+		LU632_RS06925	0.21	-0.2
1,326,247	+		LU632_RS06925	0.21	-1.7
1,326,248	-		LU632_RS06925	0.21	+0.8
1,326,248	-		LU632_RS06925	0.21	+0.3
1,326,248	-		LU632_RS06925	0.21	-0.3
1,326,292	+		LU632_RS06925	0.31	-1.0
1,326,293	-		LU632_RS06925	0.31	-0.2
1,326,293	-		LU632_RS06925	0.31	+0.2
1,326,293	-		LU632_RS06925	0.31	-1.7
1,326,295	+		LU632_RS06925	0.32	+1.8
1,326,295	+		LU632_RS06925	0.32	-1.2
1,326,295	+		LU632_RS06925	0.32	+1.6
1,326,296	-		LU632_RS06925	0.32	+0.2
1,326,296	-		LU632_RS06925	0.32	-3.3
1,326,320	+		LU632_RS06925	0.38	+3.0
1,326,321	-		LU632_RS06925	0.38	+0.4
1,326,333	+		LU632_RS06925	0.41	+0.1
1,326,333	+		LU632_RS06925	0.41	-2.0
1,326,333	+		LU632_RS06925	0.41	+2.5
1,326,334	-		LU632_RS06925	0.41	-0.9
1,326,334	-		LU632_RS06925	0.41	+0.6
1,326,334	-		LU632_RS06925	0.41	+0.4
1,326,349	-		LU632_RS06925	0.44	+0.2
1,326,349	-		LU632_RS06925	0.44	-1.5
1,326,381	-		LU632_RS06925	0.52	+0.1
1,326,503	+		LU632_RS06925	0.80	+0.9
1,326,545	+		LU632_RS06925	0.89	-0.4
1,326,585	-				-0.5
1,326,635	+		LU632_RS06930	0.10	+1.1
1,326,636	-		LU632_RS06930	0.10	-2.0
1,326,722	+		LU632_RS06930	0.28	-0.7
1,326,743	+		LU632_RS06930	0.33	-1.2
1,326,777	+		LU632_RS06930	0.40	+0.6
1,326,803	+		LU632_RS06930	0.45	+0.3
1,326,803	+		LU632_RS06930	0.45	+3.6
1,326,806	+		LU632_RS06930	0.46	-2.2
1,326,807	-		LU632_RS06930	0.46	+0.3
1,326,938	-		LU632_RS06930	0.74	-0.7
1,327,005	-		LU632_RS06930	0.88	-0.4
1,327,124	+				+0.8
1,327,124	+				+0.8
1,327,259	+		LU632_RS06935	0.28	-2.7
1,327,276	-		LU632_RS06935	0.30	+2.5
1,327,276	-		LU632_RS06935	0.30	+1.0
1,327,277	+		LU632_RS06935	0.30	+0.2
1,327,277	+		LU632_RS06935	0.30	-3.4
1,327,277	+		LU632_RS06935	0.30	-3.8
1,327,277	+		LU632_RS06935	0.30	+1.5
1,327,278	-		LU632_RS06935	0.30	-1.6
1,327,278	-		LU632_RS06935	0.30	-1.5
1,327,371	-		LU632_RS06935	0.43	-1.7
1,327,371	-		LU632_RS06935	0.43	+0.1
1,327,414	-		LU632_RS06935	0.49	+1.3
1,327,449	+		LU632_RS06935	0.54	-2.5
1,327,452	-		LU632_RS06935	0.54	+0.8
1,327,515	+		LU632_RS06935	0.63	-1.2
1,327,515	+		LU632_RS06935	0.63	-0.2
1,327,516	-		LU632_RS06935	0.63	-2.5
1,327,518	-		LU632_RS06935	0.63	-0.7
1,327,518	-		LU632_RS06935	0.63	+0.4
1,327,518	-		LU632_RS06935	0.63	+0.3
1,327,680	-		LU632_RS06935	0.86	+0.3
1,327,705	+		LU632_RS06935	0.89	+0.6
1,327,705	+		LU632_RS06935	0.89	+1.2
1,327,706	-		LU632_RS06935	0.89	-1.2
1,327,741	-				-0.7
1,327,773	+				-3.2
1,327,773	+				+0.8
1,327,872	+		LU632_RS06940	0.19	-3.1
1,327,872	+		LU632_RS06940	0.19	+1.0
1,327,872	+		LU632_RS06940	0.19	-1.3
1,327,872	+		LU632_RS06940	0.19	+1.1
1,327,888	-		LU632_RS06940	0.23	-0.4
1,327,907	+		LU632_RS06940	0.27	-0.6
1,327,908	-		LU632_RS06940	0.27	-1.7