Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05080 and LU632_RS05085 are separated by 103 nucleotides LU632_RS05085 and LU632_RS05090 are separated by 143 nucleotides LU632_RS05090 and LU632_RS05095 are separated by 2 nucleotides
LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280
_RS05080
LU632_RS05085: LU632_RS05085 - GNAT family N-acetyltransferase, at 990,384 to 990,761
_RS05085
LU632_RS05090: LU632_RS05090 - contact-dependent growth inhibition system immunity protein, at 990,905 to 991,225
_RS05090
LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061
_RS05095
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 990.441 kb on - strand, within LU632_RS05085 at 990.624 kb on - strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.625 kb on + strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.626 kb on - strand, within LU632_RS05085 at 990.702 kb on - strand, within LU632_RS05085 at 990.738 kb on - strand at 990.738 kb on - strand at 990.744 kb on - strand at 990.747 kb on + strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.748 kb on - strand at 990.749 kb on + strand at 990.755 kb on + strand at 990.916 kb on + strand at 990.917 kb on - strand at 990.922 kb on + strand at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.011 kb on + strand, within LU632_RS05090 at 991.012 kb on - strand, within LU632_RS05090 at 991.014 kb on + strand, within LU632_RS05090 at 991.015 kb on - strand, within LU632_RS05090 at 991.025 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.113 kb on + strand, within LU632_RS05090 at 991.114 kb on - strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.117 kb on + strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.118 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.122 kb on - strand, within LU632_RS05090 at 991.135 kb on + strand, within LU632_RS05090 at 991.225 kb on + strand at 991.225 kb on + strand at 991.229 kb on + strand at 991.229 kb on + strand at 991.230 kb on - strand at 991.255 kb on - strand at 991.255 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.257 kb on - strand at 991.307 kb on + strand at 991.407 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.437 kb on + strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.438 kb on - strand, within LU632_RS05095 at 991.439 kb on + strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.440 kb on - strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095 at 991.650 kb on + strand, within LU632_RS05095
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 990,441 - LU632_RS05085 0.15 -2.8 990,624 - LU632_RS05085 0.63 +0.4 990,625 + LU632_RS05085 0.64 -0.2 990,625 + LU632_RS05085 0.64 -0.0 990,625 + LU632_RS05085 0.64 +0.3 990,625 + LU632_RS05085 0.64 +0.5 990,625 + LU632_RS05085 0.64 -2.0 990,626 - LU632_RS05085 0.64 -0.3 990,626 - LU632_RS05085 0.64 +2.8 990,626 - LU632_RS05085 0.64 -0.0 990,626 - LU632_RS05085 0.64 -2.7 990,626 - LU632_RS05085 0.64 -2.1 990,626 - LU632_RS05085 0.64 +5.3 990,626 - LU632_RS05085 0.64 +0.4 990,626 - LU632_RS05085 0.64 +0.6 990,626 - LU632_RS05085 0.64 -2.0 990,702 - LU632_RS05085 0.84 -1.6 990,738 - +2.0 990,738 - +0.3 990,744 - +1.8 990,747 + -3.1 990,748 - -1.0 990,748 - -0.0 990,748 - +2.2 990,748 - -1.0 990,749 + -3.6 990,755 + -0.1 990,916 + +0.8 990,917 - +0.3 990,922 + -2.5 991,011 + LU632_RS05090 0.33 +1.9 991,011 + LU632_RS05090 0.33 +0.5 991,011 + LU632_RS05090 0.33 -0.7 991,012 - LU632_RS05090 0.33 -0.0 991,014 + LU632_RS05090 0.34 -0.5 991,015 - LU632_RS05090 0.34 -0.4 991,025 + LU632_RS05090 0.37 -1.0 991,113 + LU632_RS05090 0.65 -0.6 991,113 + LU632_RS05090 0.65 -1.3 991,114 - LU632_RS05090 0.65 +3.1 991,117 + LU632_RS05090 0.66 -0.5 991,117 + LU632_RS05090 0.66 -0.0 991,117 + LU632_RS05090 0.66 -0.7 991,118 - LU632_RS05090 0.66 +0.6 991,118 - LU632_RS05090 0.66 -1.6 991,122 - LU632_RS05090 0.68 -1.8 991,122 - LU632_RS05090 0.68 -1.6 991,135 + LU632_RS05090 0.72 +1.0 991,225 + -0.6 991,225 + -2.8 991,229 + -0.6 991,229 + -2.0 991,230 - -2.0 991,255 - -1.0 991,255 - -0.0 991,257 - -2.9 991,257 - +2.5 991,257 - -1.1 991,307 + -1.3 991,407 + LU632_RS05095 0.21 +1.1 991,437 + LU632_RS05095 0.25 -0.6 991,437 + LU632_RS05095 0.25 -0.2 991,437 + LU632_RS05095 0.25 -1.2 991,437 + LU632_RS05095 0.25 +0.4 991,437 + LU632_RS05095 0.25 -1.6 991,438 - LU632_RS05095 0.25 +0.6 991,438 - LU632_RS05095 0.25 -1.0 991,438 - LU632_RS05095 0.25 +1.2 991,438 - LU632_RS05095 0.25 +0.0 991,439 + LU632_RS05095 0.25 +1.7 991,440 - LU632_RS05095 0.25 +0.4 991,440 - LU632_RS05095 0.25 +3.4 991,440 - LU632_RS05095 0.25 +1.1 991,650 + LU632_RS05095 0.51 +0.8 991,650 + LU632_RS05095 0.51 +2.0
Or see this region's nucleotide sequence