Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02820 and thiQ are separated by 232 nucleotides thiQ and thiP overlap by 17 nucleotides
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
LU632_RS02825: thiQ - thiamine ABC transporter ATP-binding protein ThiQ, at 574,647 to 575,348
thiQ
LU632_RS02830: thiP - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 575,332 to 576,942
thiP
Position (kb) 574
575
576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 573.647 kb on - strand at 573.647 kb on - strand at 573.670 kb on + strand at 573.670 kb on + strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.672 kb on + strand at 573.672 kb on + strand at 573.916 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 574.093 kb on - strand, within LU632_RS02820 at 574.160 kb on - strand, within LU632_RS02820 at 574.165 kb on + strand, within LU632_RS02820 at 574.172 kb on - strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand at 574.489 kb on - strand at 574.493 kb on - strand at 574.494 kb on - strand at 574.649 kb on - strand at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.748 kb on + strand, within thiQ at 574.791 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.808 kb on + strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.809 kb on - strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.824 kb on + strand, within thiQ at 574.825 kb on - strand, within thiQ at 574.825 kb on - strand, within thiQ at 575.013 kb on - strand, within thiQ at 575.091 kb on + strand, within thiQ at 575.283 kb on + strand at 575.284 kb on - strand at 575.284 kb on - strand at 575.317 kb on + strand at 575.333 kb on + strand at 575.343 kb on + strand at 575.639 kb on + strand, within thiP at 575.657 kb on + strand, within thiP at 575.658 kb on - strand, within thiP at 575.716 kb on + strand, within thiP at 575.716 kb on + strand, within thiP at 575.717 kb on - strand, within thiP at 575.717 kb on - strand, within thiP at 575.947 kb on + strand, within thiP at 575.947 kb on + strand, within thiP at 575.977 kb on + strand, within thiP at 575.980 kb on + strand, within thiP at 575.981 kb on - strand, within thiP at 576.088 kb on + strand, within thiP
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 573,647 - -1.4 573,647 - -0.2 573,670 + -0.5 573,670 + +0.1 573,671 - -0.2 573,671 - +0.6 573,671 - -2.3 573,671 - -0.8 573,672 + -0.6 573,672 + +1.0 573,916 + LU632_RS02820 0.35 +0.0 573,975 + LU632_RS02820 0.43 -4.3 573,975 + LU632_RS02820 0.43 -1.2 573,975 + LU632_RS02820 0.43 -0.2 574,093 - LU632_RS02820 0.58 -0.6 574,160 - LU632_RS02820 0.67 +0.2 574,165 + LU632_RS02820 0.67 -0.4 574,172 - LU632_RS02820 0.68 -0.6 574,177 + LU632_RS02820 0.69 -2.5 574,177 + LU632_RS02820 0.69 -1.0 574,177 + LU632_RS02820 0.69 -1.8 574,178 - LU632_RS02820 0.69 +2.4 574,178 - LU632_RS02820 0.69 -1.1 574,178 - LU632_RS02820 0.69 -0.6 574,343 - -0.1 574,386 + +0.0 574,386 + -1.0 574,386 + +1.0 574,412 + -0.8 574,489 - +1.2 574,493 - -0.2 574,494 - -0.6 574,649 - -2.3 574,748 + thiQ LU632_RS02825 0.14 -2.7 574,748 + thiQ LU632_RS02825 0.14 +0.9 574,748 + thiQ LU632_RS02825 0.14 -1.0 574,791 + thiQ LU632_RS02825 0.21 -2.3 574,808 + thiQ LU632_RS02825 0.23 +1.1 574,808 + thiQ LU632_RS02825 0.23 +1.4 574,808 + thiQ LU632_RS02825 0.23 -1.0 574,809 - thiQ LU632_RS02825 0.23 -0.8 574,809 - thiQ LU632_RS02825 0.23 +1.2 574,824 + thiQ LU632_RS02825 0.25 -1.4 574,824 + thiQ LU632_RS02825 0.25 -2.7 574,825 - thiQ LU632_RS02825 0.25 +0.2 574,825 - thiQ LU632_RS02825 0.25 -1.4 575,013 - thiQ LU632_RS02825 0.52 -1.2 575,091 + thiQ LU632_RS02825 0.63 -0.6 575,283 + +1.0 575,284 - +0.0 575,284 - -0.1 575,317 + +1.6 575,333 + -1.6 575,343 + +0.0 575,639 + thiP LU632_RS02830 0.19 -3.4 575,657 + thiP LU632_RS02830 0.20 +0.0 575,658 - thiP LU632_RS02830 0.20 +2.0 575,716 + thiP LU632_RS02830 0.24 -1.0 575,716 + thiP LU632_RS02830 0.24 -0.6 575,717 - thiP LU632_RS02830 0.24 -1.6 575,717 - thiP LU632_RS02830 0.24 -1.0 575,947 + thiP LU632_RS02830 0.38 +0.2 575,947 + thiP LU632_RS02830 0.38 -0.6 575,977 + thiP LU632_RS02830 0.40 +0.0 575,980 + thiP LU632_RS02830 0.40 -2.1 575,981 - thiP LU632_RS02830 0.40 -1.6 576,088 + thiP LU632_RS02830 0.47 +0.4
Or see this region's nucleotide sequence