Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14685 and SGL_RS14690 are separated by 269 nucleotides SGL_RS14690 and SGL_RS14695 are separated by 88 nucleotides SGL_RS14695 and SGL_RS14700 are separated by 71 nucleotides
SGL_RS14685: SGL_RS14685 - hypothetical protein, at 2,746,288 to 2,747,334
_RS14685
SGL_RS14690: SGL_RS14690 - HAMP domain-containing sensor histidine kinase, at 2,747,604 to 2,748,857
_RS14690
SGL_RS14695: SGL_RS14695 - DUF2839 domain-containing protein, at 2,748,946 to 2,749,158
_RS14695
SGL_RS14700: SGL_RS14700 - GNAT family N-acetyltransferase, at 2,749,230 to 2,750,441
_RS14700
Position (kb)
2747
2748
2749 Strain fitness (log2 ratio)
-1
0
1 at 2746.799 kb on - strand, within SGL_RS14685 at 2746.833 kb on + strand, within SGL_RS14685 at 2746.961 kb on + strand, within SGL_RS14685 at 2747.336 kb on - strand at 2747.618 kb on + strand at 2747.653 kb on + strand at 2747.732 kb on - strand, within SGL_RS14690 at 2747.786 kb on - strand, within SGL_RS14690 at 2747.804 kb on + strand, within SGL_RS14690 at 2747.812 kb on - strand, within SGL_RS14690 at 2747.869 kb on - strand, within SGL_RS14690 at 2747.886 kb on + strand, within SGL_RS14690 at 2748.238 kb on + strand, within SGL_RS14690 at 2748.720 kb on + strand, within SGL_RS14690 at 2748.730 kb on - strand, within SGL_RS14690 at 2748.962 kb on + strand at 2748.970 kb on - strand, within SGL_RS14695 at 2749.006 kb on + strand, within SGL_RS14695 at 2749.088 kb on + strand, within SGL_RS14695 at 2749.101 kb on + strand, within SGL_RS14695 at 2749.174 kb on + strand at 2749.182 kb on - strand at 2749.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,746,799 - SGL_RS14685 0.49 -0.6 2,746,833 + SGL_RS14685 0.52 -0.2 2,746,961 + SGL_RS14685 0.64 +0.1 2,747,336 - +0.1 2,747,618 + -0.3 2,747,653 + +0.0 2,747,732 - SGL_RS14690 0.10 +0.2 2,747,786 - SGL_RS14690 0.15 -0.1 2,747,804 + SGL_RS14690 0.16 +0.5 2,747,812 - SGL_RS14690 0.17 +0.2 2,747,869 - SGL_RS14690 0.21 +0.8 2,747,886 + SGL_RS14690 0.22 +0.2 2,748,238 + SGL_RS14690 0.51 +0.2 2,748,720 + SGL_RS14690 0.89 +0.1 2,748,730 - SGL_RS14690 0.90 +0.5 2,748,962 + -0.4 2,748,970 - SGL_RS14695 0.11 -0.5 2,749,006 + SGL_RS14695 0.28 -0.7 2,749,088 + SGL_RS14695 0.67 -0.5 2,749,101 + SGL_RS14695 0.73 -0.0 2,749,174 + +0.1 2,749,182 - -0.4 2,749,182 - -0.1
Or see this region's nucleotide sequence