Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00265 and SGL_RS00270 overlap by 33 nucleotides SGL_RS00270 and SGL_RS00275 are separated by 2 nucleotides SGL_RS00275 and SGL_RS00280 are separated by 36 nucleotides SGL_RS00280 and SGL_RS00285 are separated by 85 nucleotides SGL_RS00285 and SGL_RS00290 overlap by 29 nucleotides
SGL_RS00265: SGL_RS00265 - NACHT domain-containing NTPase, at 57,972 to 60,323
_RS00265
SGL_RS00270: SGL_RS00270 - response regulator, at 60,291 to 61,199
_RS00270
SGL_RS00275: SGL_RS00275 - response regulator, at 61,202 to 64,831
_RS00275
SGL_RS00280: SGL_RS00280 - PAS domain S-box protein, at 64,868 to 65,245
_RS00280
SGL_RS00285: SGL_RS00285 - hypothetical protein, at 65,331 to 65,786
_RS00285
SGL_RS00290: SGL_RS00290 - transposase, at 65,758 to 66,480
_RS00290
Position (kb) 61
62
63
64
65 Strain fitness (log2 ratio) -1
0
1
2 at 60.238 kb on + strand at 60.246 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.303 kb on - strand at 60.326 kb on + strand at 60.339 kb on - strand at 60.349 kb on - strand at 60.398 kb on + strand, within SGL_RS00270 at 60.456 kb on - strand, within SGL_RS00270 at 60.592 kb on + strand, within SGL_RS00270 at 60.611 kb on + strand, within SGL_RS00270 at 60.747 kb on - strand, within SGL_RS00270 at 61.377 kb on - strand at 61.385 kb on - strand at 61.400 kb on + strand at 61.843 kb on + strand, within SGL_RS00275 at 61.907 kb on - strand, within SGL_RS00275 at 61.978 kb on - strand, within SGL_RS00275 at 61.984 kb on + strand, within SGL_RS00275 at 62.027 kb on - strand, within SGL_RS00275 at 62.142 kb on + strand, within SGL_RS00275 at 62.142 kb on + strand, within SGL_RS00275 at 62.167 kb on + strand, within SGL_RS00275 at 62.174 kb on - strand, within SGL_RS00275 at 62.260 kb on + strand, within SGL_RS00275 at 62.328 kb on - strand, within SGL_RS00275 at 62.406 kb on - strand, within SGL_RS00275 at 62.442 kb on + strand, within SGL_RS00275 at 62.442 kb on + strand, within SGL_RS00275 at 62.455 kb on + strand, within SGL_RS00275 at 62.455 kb on + strand, within SGL_RS00275 at 62.625 kb on + strand, within SGL_RS00275 at 62.725 kb on + strand, within SGL_RS00275 at 62.734 kb on - strand, within SGL_RS00275 at 62.771 kb on - strand, within SGL_RS00275 at 62.771 kb on - strand, within SGL_RS00275 at 62.774 kb on + strand, within SGL_RS00275 at 62.890 kb on + strand, within SGL_RS00275 at 62.983 kb on - strand, within SGL_RS00275 at 63.046 kb on - strand, within SGL_RS00275 at 63.228 kb on + strand, within SGL_RS00275 at 63.325 kb on + strand, within SGL_RS00275 at 63.646 kb on + strand, within SGL_RS00275 at 63.748 kb on - strand, within SGL_RS00275 at 63.760 kb on + strand, within SGL_RS00275 at 63.762 kb on + strand, within SGL_RS00275 at 63.793 kb on + strand, within SGL_RS00275 at 63.961 kb on + strand, within SGL_RS00275 at 63.993 kb on - strand, within SGL_RS00275 at 64.189 kb on + strand, within SGL_RS00275 at 64.703 kb on - strand at 65.145 kb on - strand, within SGL_RS00280 at 65.219 kb on - strand at 65.221 kb on + strand at 65.221 kb on + strand at 65.229 kb on - strand at 65.239 kb on - strand at 65.459 kb on + strand, within SGL_RS00285 at 65.482 kb on + strand, within SGL_RS00285 at 65.529 kb on + strand, within SGL_RS00285 at 65.563 kb on + strand, within SGL_RS00285 at 65.576 kb on - strand, within SGL_RS00285 at 65.597 kb on - strand, within SGL_RS00285 at 65.598 kb on - strand, within SGL_RS00285 at 65.754 kb on - strand at 65.754 kb on - strand at 65.814 kb on + strand at 65.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 60,238 + +2.1 60,246 - +2.1 60,303 - +1.7 60,303 - +1.5 60,303 - +1.5 60,303 - +1.3 60,326 + +2.2 60,339 - +1.3 60,349 - +1.7 60,398 + SGL_RS00270 0.12 +1.9 60,456 - SGL_RS00270 0.18 +1.8 60,592 + SGL_RS00270 0.33 +1.8 60,611 + SGL_RS00270 0.35 +1.7 60,747 - SGL_RS00270 0.50 +1.6 61,377 - +1.0 61,385 - -0.1 61,400 + +1.1 61,843 + SGL_RS00275 0.18 +1.0 61,907 - SGL_RS00275 0.19 +1.1 61,978 - SGL_RS00275 0.21 +0.6 61,984 + SGL_RS00275 0.22 +0.8 62,027 - SGL_RS00275 0.23 -1.5 62,142 + SGL_RS00275 0.26 +0.9 62,142 + SGL_RS00275 0.26 +0.8 62,167 + SGL_RS00275 0.27 +1.8 62,174 - SGL_RS00275 0.27 +1.0 62,260 + SGL_RS00275 0.29 +0.5 62,328 - SGL_RS00275 0.31 +0.7 62,406 - SGL_RS00275 0.33 +1.1 62,442 + SGL_RS00275 0.34 +1.9 62,442 + SGL_RS00275 0.34 +0.6 62,455 + SGL_RS00275 0.35 +1.1 62,455 + SGL_RS00275 0.35 +0.6 62,625 + SGL_RS00275 0.39 +1.2 62,725 + SGL_RS00275 0.42 +1.2 62,734 - SGL_RS00275 0.42 +0.3 62,771 - SGL_RS00275 0.43 +0.6 62,771 - SGL_RS00275 0.43 +2.4 62,774 + SGL_RS00275 0.43 +0.8 62,890 + SGL_RS00275 0.47 +1.1 62,983 - SGL_RS00275 0.49 +0.6 63,046 - SGL_RS00275 0.51 +0.8 63,228 + SGL_RS00275 0.56 +0.5 63,325 + SGL_RS00275 0.58 +0.9 63,646 + SGL_RS00275 0.67 +0.9 63,748 - SGL_RS00275 0.70 +0.5 63,760 + SGL_RS00275 0.70 +1.1 63,762 + SGL_RS00275 0.71 +0.8 63,793 + SGL_RS00275 0.71 -1.5 63,961 + SGL_RS00275 0.76 +0.3 63,993 - SGL_RS00275 0.77 +0.5 64,189 + SGL_RS00275 0.82 +1.4 64,703 - +0.3 65,145 - SGL_RS00280 0.73 +0.5 65,219 - +0.5 65,221 + +0.7 65,221 + +1.0 65,229 - +1.0 65,239 - +0.3 65,459 + SGL_RS00285 0.28 +0.3 65,482 + SGL_RS00285 0.33 +0.3 65,529 + SGL_RS00285 0.43 +0.5 65,563 + SGL_RS00285 0.51 +0.3 65,576 - SGL_RS00285 0.54 +0.2 65,597 - SGL_RS00285 0.58 +0.5 65,598 - SGL_RS00285 0.59 +0.1 65,754 - +0.3 65,754 - +0.5 65,814 + +0.2 65,815 + +0.4
Or see this region's nucleotide sequence