Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13475 and SGL_RS13480 are separated by 28 nucleotides SGL_RS13480 and SGL_RS13485 overlap by 16 nucleotides SGL_RS13485 and SGL_RS13490 are separated by 51 nucleotides
SGL_RS13475: SGL_RS13475 - fimbria/pilus outer membrane usher protein, at 2,490,326 to 2,493,004
_RS13475
SGL_RS13480: SGL_RS13480 - hypothetical protein, at 2,493,033 to 2,493,593
_RS13480
SGL_RS13485: SGL_RS13485 - Uma2 family endonuclease, at 2,493,578 to 2,494,153
_RS13485
SGL_RS13490: SGL_RS13490 - aspartate aminotransferase, at 2,494,205 to 2,495,389
_RS13490
Position (kb)
2493
2494
2495 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2492.621 kb on - strand, within SGL_RS13475 at 2492.701 kb on + strand, within SGL_RS13475 at 2492.814 kb on - strand at 2492.884 kb on + strand at 2493.129 kb on + strand, within SGL_RS13480 at 2493.249 kb on + strand, within SGL_RS13480 at 2493.385 kb on + strand, within SGL_RS13480 at 2493.393 kb on - strand, within SGL_RS13480 at 2493.565 kb on + strand at 2493.746 kb on + strand, within SGL_RS13485 at 2493.748 kb on - strand, within SGL_RS13485 at 2493.788 kb on + strand, within SGL_RS13485 at 2493.986 kb on + strand, within SGL_RS13485 at 2494.020 kb on + strand, within SGL_RS13485 at 2494.027 kb on + strand, within SGL_RS13485 at 2494.384 kb on - strand, within SGL_RS13490 at 2494.392 kb on - strand, within SGL_RS13490 at 2494.398 kb on + strand, within SGL_RS13490 at 2494.405 kb on + strand, within SGL_RS13490 at 2494.423 kb on - strand, within SGL_RS13490 at 2494.757 kb on + strand, within SGL_RS13490 at 2495.050 kb on - strand, within SGL_RS13490 at 2495.050 kb on - strand, within SGL_RS13490 at 2495.050 kb on - strand, within SGL_RS13490 at 2495.056 kb on + strand, within SGL_RS13490
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,492,621 - SGL_RS13475 0.86 -0.0 2,492,701 + SGL_RS13475 0.89 -1.3 2,492,814 - +1.9 2,492,884 + -0.0 2,493,129 + SGL_RS13480 0.17 +0.1 2,493,249 + SGL_RS13480 0.39 +0.3 2,493,385 + SGL_RS13480 0.63 +0.2 2,493,393 - SGL_RS13480 0.64 +0.8 2,493,565 + -0.6 2,493,746 + SGL_RS13485 0.29 +0.2 2,493,748 - SGL_RS13485 0.30 +0.4 2,493,788 + SGL_RS13485 0.36 +0.1 2,493,986 + SGL_RS13485 0.71 +0.2 2,494,020 + SGL_RS13485 0.77 +0.1 2,494,027 + SGL_RS13485 0.78 +0.8 2,494,384 - SGL_RS13490 0.15 -0.7 2,494,392 - SGL_RS13490 0.16 -0.4 2,494,398 + SGL_RS13490 0.16 -1.8 2,494,405 + SGL_RS13490 0.17 -0.3 2,494,423 - SGL_RS13490 0.18 -0.9 2,494,757 + SGL_RS13490 0.47 -1.0 2,495,050 - SGL_RS13490 0.71 +0.4 2,495,050 - SGL_RS13490 0.71 -0.5 2,495,050 - SGL_RS13490 0.71 -0.4 2,495,056 + SGL_RS13490 0.72 -0.6
Or see this region's nucleotide sequence