Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16580 and SGL_RS16585 are separated by 72 nucleotides SGL_RS16585 and SGL_RS16590 are separated by 283 nucleotides
SGL_RS16580: SGL_RS16580 - nitrate ABC transporter ATP-binding protein, at 3,173,335 to 3,175,338
_RS16580
SGL_RS16585: SGL_RS16585 - nitrate ABC transporter ATP-binding protein, at 3,175,411 to 3,176,259
_RS16585
SGL_RS16590: SGL_RS16590 - NADH-quinone oxidoreductase subunit M, at 3,176,543 to 3,178,066
_RS16590
Position (kb)
3175
3176
3177 Strain fitness (log2 ratio)
-1
0
1 at 3174.445 kb on - strand, within SGL_RS16580 at 3174.479 kb on - strand, within SGL_RS16580 at 3174.479 kb on - strand, within SGL_RS16580 at 3174.502 kb on + strand, within SGL_RS16580 at 3174.516 kb on - strand, within SGL_RS16580 at 3174.554 kb on - strand, within SGL_RS16580 at 3174.558 kb on + strand, within SGL_RS16580 at 3174.571 kb on - strand, within SGL_RS16580 at 3174.688 kb on - strand, within SGL_RS16580 at 3174.725 kb on + strand, within SGL_RS16580 at 3174.725 kb on + strand, within SGL_RS16580 at 3174.824 kb on - strand, within SGL_RS16580 at 3174.834 kb on - strand, within SGL_RS16580 at 3174.944 kb on + strand, within SGL_RS16580 at 3175.426 kb on - strand at 3175.486 kb on + strand at 3175.504 kb on + strand, within SGL_RS16585 at 3175.506 kb on + strand, within SGL_RS16585 at 3175.512 kb on - strand, within SGL_RS16585 at 3175.655 kb on + strand, within SGL_RS16585 at 3175.663 kb on - strand, within SGL_RS16585 at 3175.668 kb on - strand, within SGL_RS16585 at 3175.697 kb on - strand, within SGL_RS16585 at 3175.846 kb on - strand, within SGL_RS16585 at 3175.915 kb on - strand, within SGL_RS16585 at 3175.939 kb on - strand, within SGL_RS16585 at 3175.959 kb on + strand, within SGL_RS16585 at 3176.028 kb on + strand, within SGL_RS16585 at 3176.210 kb on - strand at 3176.242 kb on - strand at 3176.296 kb on + strand at 3176.333 kb on - strand at 3176.443 kb on + strand at 3176.521 kb on - strand at 3176.540 kb on + strand at 3176.608 kb on - strand at 3176.653 kb on + strand at 3176.734 kb on + strand, within SGL_RS16590 at 3176.924 kb on + strand, within SGL_RS16590 at 3176.924 kb on + strand, within SGL_RS16590 at 3176.924 kb on + strand, within SGL_RS16590 at 3176.984 kb on - strand, within SGL_RS16590
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,174,445 - SGL_RS16580 0.55 +0.1 3,174,479 - SGL_RS16580 0.57 -0.0 3,174,479 - SGL_RS16580 0.57 +0.3 3,174,502 + SGL_RS16580 0.58 +0.0 3,174,516 - SGL_RS16580 0.59 -0.3 3,174,554 - SGL_RS16580 0.61 -0.2 3,174,558 + SGL_RS16580 0.61 -0.0 3,174,571 - SGL_RS16580 0.62 -0.1 3,174,688 - SGL_RS16580 0.68 +0.2 3,174,725 + SGL_RS16580 0.69 +0.1 3,174,725 + SGL_RS16580 0.69 +0.4 3,174,824 - SGL_RS16580 0.74 -0.6 3,174,834 - SGL_RS16580 0.75 -0.3 3,174,944 + SGL_RS16580 0.80 +0.1 3,175,426 - -0.2 3,175,486 + -0.2 3,175,504 + SGL_RS16585 0.11 -0.0 3,175,506 + SGL_RS16585 0.11 +1.0 3,175,512 - SGL_RS16585 0.12 +0.1 3,175,655 + SGL_RS16585 0.29 +0.0 3,175,663 - SGL_RS16585 0.30 +0.9 3,175,668 - SGL_RS16585 0.30 +0.2 3,175,697 - SGL_RS16585 0.34 +0.2 3,175,846 - SGL_RS16585 0.51 +0.5 3,175,915 - SGL_RS16585 0.59 +0.5 3,175,939 - SGL_RS16585 0.62 +0.0 3,175,959 + SGL_RS16585 0.65 -0.1 3,176,028 + SGL_RS16585 0.73 +0.3 3,176,210 - -0.1 3,176,242 - +0.3 3,176,296 + +0.1 3,176,333 - +0.1 3,176,443 + +0.1 3,176,521 - +0.3 3,176,540 + -0.1 3,176,608 - -1.2 3,176,653 + +0.2 3,176,734 + SGL_RS16590 0.13 -0.3 3,176,924 + SGL_RS16590 0.25 -0.6 3,176,924 + SGL_RS16590 0.25 -0.0 3,176,924 + SGL_RS16590 0.25 -1.6 3,176,984 - SGL_RS16590 0.29 -0.7
Or see this region's nucleotide sequence