Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16585

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16580 and SGL_RS16585 are separated by 72 nucleotidesSGL_RS16585 and SGL_RS16590 are separated by 283 nucleotides SGL_RS16580: SGL_RS16580 - nitrate ABC transporter ATP-binding protein, at 3,173,335 to 3,175,338 _RS16580 SGL_RS16585: SGL_RS16585 - nitrate ABC transporter ATP-binding protein, at 3,175,411 to 3,176,259 _RS16585 SGL_RS16590: SGL_RS16590 - NADH-quinone oxidoreductase subunit M, at 3,176,543 to 3,178,066 _RS16590 Position (kb) 3175 3176 3177Strain fitness (log2 ratio) -1 0 1at 3174.445 kb on - strand, within SGL_RS16580at 3174.479 kb on - strand, within SGL_RS16580at 3174.479 kb on - strand, within SGL_RS16580at 3174.502 kb on + strand, within SGL_RS16580at 3174.516 kb on - strand, within SGL_RS16580at 3174.554 kb on - strand, within SGL_RS16580at 3174.558 kb on + strand, within SGL_RS16580at 3174.571 kb on - strand, within SGL_RS16580at 3174.688 kb on - strand, within SGL_RS16580at 3174.725 kb on + strand, within SGL_RS16580at 3174.725 kb on + strand, within SGL_RS16580at 3174.824 kb on - strand, within SGL_RS16580at 3174.834 kb on - strand, within SGL_RS16580at 3174.944 kb on + strand, within SGL_RS16580at 3175.426 kb on - strandat 3175.486 kb on + strandat 3175.504 kb on + strand, within SGL_RS16585at 3175.506 kb on + strand, within SGL_RS16585at 3175.512 kb on - strand, within SGL_RS16585at 3175.655 kb on + strand, within SGL_RS16585at 3175.663 kb on - strand, within SGL_RS16585at 3175.668 kb on - strand, within SGL_RS16585at 3175.697 kb on - strand, within SGL_RS16585at 3175.846 kb on - strand, within SGL_RS16585at 3175.915 kb on - strand, within SGL_RS16585at 3175.939 kb on - strand, within SGL_RS16585at 3175.959 kb on + strand, within SGL_RS16585at 3176.028 kb on + strand, within SGL_RS16585at 3176.210 kb on - strandat 3176.242 kb on - strandat 3176.296 kb on + strandat 3176.333 kb on - strandat 3176.443 kb on + strandat 3176.521 kb on - strandat 3176.540 kb on + strandat 3176.608 kb on - strandat 3176.653 kb on + strandat 3176.734 kb on + strand, within SGL_RS16590at 3176.924 kb on + strand, within SGL_RS16590at 3176.924 kb on + strand, within SGL_RS16590at 3176.924 kb on + strand, within SGL_RS16590at 3176.984 kb on - strand, within SGL_RS16590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
3,174,445 - SGL_RS16580 0.55 +0.1
3,174,479 - SGL_RS16580 0.57 -0.0
3,174,479 - SGL_RS16580 0.57 +0.3
3,174,502 + SGL_RS16580 0.58 +0.0
3,174,516 - SGL_RS16580 0.59 -0.3
3,174,554 - SGL_RS16580 0.61 -0.2
3,174,558 + SGL_RS16580 0.61 -0.0
3,174,571 - SGL_RS16580 0.62 -0.1
3,174,688 - SGL_RS16580 0.68 +0.2
3,174,725 + SGL_RS16580 0.69 +0.1
3,174,725 + SGL_RS16580 0.69 +0.4
3,174,824 - SGL_RS16580 0.74 -0.6
3,174,834 - SGL_RS16580 0.75 -0.3
3,174,944 + SGL_RS16580 0.80 +0.1
3,175,426 - -0.2
3,175,486 + -0.2
3,175,504 + SGL_RS16585 0.11 -0.0
3,175,506 + SGL_RS16585 0.11 +1.0
3,175,512 - SGL_RS16585 0.12 +0.1
3,175,655 + SGL_RS16585 0.29 +0.0
3,175,663 - SGL_RS16585 0.30 +0.9
3,175,668 - SGL_RS16585 0.30 +0.2
3,175,697 - SGL_RS16585 0.34 +0.2
3,175,846 - SGL_RS16585 0.51 +0.5
3,175,915 - SGL_RS16585 0.59 +0.5
3,175,939 - SGL_RS16585 0.62 +0.0
3,175,959 + SGL_RS16585 0.65 -0.1
3,176,028 + SGL_RS16585 0.73 +0.3
3,176,210 - -0.1
3,176,242 - +0.3
3,176,296 + +0.1
3,176,333 - +0.1
3,176,443 + +0.1
3,176,521 - +0.3
3,176,540 + -0.1
3,176,608 - -1.2
3,176,653 + +0.2
3,176,734 + SGL_RS16590 0.13 -0.3
3,176,924 + SGL_RS16590 0.25 -0.6
3,176,924 + SGL_RS16590 0.25 -0.0
3,176,924 + SGL_RS16590 0.25 -1.6
3,176,984 - SGL_RS16590 0.29 -0.7

Or see this region's nucleotide sequence