Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13455

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13445 and SGL_RS13450 are separated by 62 nucleotidesSGL_RS13450 and SGL_RS13455 are separated by 462 nucleotidesSGL_RS13455 and SGL_RS13460 are separated by 412 nucleotides SGL_RS13445: SGL_RS13445 - lipid-A-disaccharide synthase, at 2,483,643 to 2,484,827 _RS13445 SGL_RS13450: SGL_RS13450 - ferredoxin PetF1, at 2,484,890 to 2,485,183 _RS13450 SGL_RS13455: SGL_RS13455 - RDD family protein, at 2,485,646 to 2,486,194 _RS13455 SGL_RS13460: SGL_RS13460 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,486,607 to 2,487,923 _RS13460 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -1 0 1at 2484.786 kb on + strandat 2484.794 kb on - strandat 2484.889 kb on - strandat 2485.424 kb on + strandat 2485.666 kb on - strandat 2485.682 kb on + strandat 2485.690 kb on - strandat 2485.690 kb on - strandat 2485.714 kb on - strand, within SGL_RS13455at 2485.832 kb on - strand, within SGL_RS13455at 2485.834 kb on + strand, within SGL_RS13455at 2485.957 kb on - strand, within SGL_RS13455at 2486.223 kb on + strandat 2486.310 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,484,786 + -0.0
2,484,794 - -0.6
2,484,889 - -1.2
2,485,424 + -0.1
2,485,666 - -0.3
2,485,682 + -0.5
2,485,690 - -0.2
2,485,690 - -0.5
2,485,714 - SGL_RS13455 0.12 +0.8
2,485,832 - SGL_RS13455 0.34 +0.2
2,485,834 + SGL_RS13455 0.34 -0.2
2,485,957 - SGL_RS13455 0.57 +0.1
2,486,223 + +0.3
2,486,310 - +0.5

Or see this region's nucleotide sequence