Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13445 and SGL_RS13450 are separated by 62 nucleotides SGL_RS13450 and SGL_RS13455 are separated by 462 nucleotides SGL_RS13455 and SGL_RS13460 are separated by 412 nucleotides
SGL_RS13445: SGL_RS13445 - lipid-A-disaccharide synthase, at 2,483,643 to 2,484,827
_RS13445
SGL_RS13450: SGL_RS13450 - ferredoxin PetF1, at 2,484,890 to 2,485,183
_RS13450
SGL_RS13455: SGL_RS13455 - RDD family protein, at 2,485,646 to 2,486,194
_RS13455
SGL_RS13460: SGL_RS13460 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,486,607 to 2,487,923
_RS13460
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-1
0
1 at 2484.786 kb on + strand at 2484.794 kb on - strand at 2484.889 kb on - strand at 2485.424 kb on + strand at 2485.666 kb on - strand at 2485.682 kb on + strand at 2485.690 kb on - strand at 2485.690 kb on - strand at 2485.714 kb on - strand, within SGL_RS13455 at 2485.832 kb on - strand, within SGL_RS13455 at 2485.834 kb on + strand, within SGL_RS13455 at 2485.957 kb on - strand, within SGL_RS13455 at 2486.223 kb on + strand at 2486.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,484,786 + -0.0 2,484,794 - -0.6 2,484,889 - -1.2 2,485,424 + -0.1 2,485,666 - -0.3 2,485,682 + -0.5 2,485,690 - -0.2 2,485,690 - -0.5 2,485,714 - SGL_RS13455 0.12 +0.8 2,485,832 - SGL_RS13455 0.34 +0.2 2,485,834 + SGL_RS13455 0.34 -0.2 2,485,957 - SGL_RS13455 0.57 +0.1 2,486,223 + +0.3 2,486,310 - +0.5
Or see this region's nucleotide sequence