Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09560 and SGL_RS09565 are separated by 21 nucleotides SGL_RS09565 and SGL_RS09570 are separated by 119 nucleotides SGL_RS09570 and SGL_RS09575 are separated by 696 nucleotides
SGL_RS09560: SGL_RS09560 - SDR family oxidoreductase, at 1,636,705 to 1,637,454
_RS09560
SGL_RS09565: SGL_RS09565 - DUF115 domain-containing protein, at 1,637,476 to 1,638,270
_RS09565
SGL_RS09570: SGL_RS09570 - glycosyltransferase family 2 protein, at 1,638,390 to 1,639,247
_RS09570
SGL_RS09575: SGL_RS09575 - hypothetical protein, at 1,639,944 to 1,640,519
_RS09575
Position (kb)
1638
1639
1640 Strain fitness (log2 ratio)
-1
0
1 at 1637.391 kb on + strand at 1637.399 kb on - strand at 1637.439 kb on + strand at 1637.452 kb on - strand at 1637.492 kb on - strand at 1637.499 kb on - strand at 1637.519 kb on - strand at 1637.552 kb on + strand at 1637.579 kb on - strand, within SGL_RS09565 at 1637.597 kb on + strand, within SGL_RS09565 at 1638.133 kb on - strand, within SGL_RS09565 at 1638.502 kb on - strand, within SGL_RS09570 at 1638.520 kb on + strand, within SGL_RS09570 at 1638.639 kb on + strand, within SGL_RS09570 at 1639.191 kb on + strand at 1639.374 kb on - strand at 1639.537 kb on - strand at 1639.539 kb on + strand at 1639.799 kb on - strand at 1639.909 kb on + strand at 1639.914 kb on + strand at 1639.914 kb on + strand at 1639.962 kb on - strand at 1639.984 kb on + strand at 1640.002 kb on - strand, within SGL_RS09575 at 1640.130 kb on + strand, within SGL_RS09575 at 1640.149 kb on - strand, within SGL_RS09575 at 1640.165 kb on + strand, within SGL_RS09575
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,637,391 + +0.1 1,637,399 - +0.1 1,637,439 + +0.1 1,637,452 - +0.1 1,637,492 - +0.1 1,637,499 - +0.3 1,637,519 - +0.2 1,637,552 + +0.0 1,637,579 - SGL_RS09565 0.13 +0.7 1,637,597 + SGL_RS09565 0.15 +0.2 1,638,133 - SGL_RS09565 0.83 +0.7 1,638,502 - SGL_RS09570 0.13 +0.4 1,638,520 + SGL_RS09570 0.15 +0.2 1,638,639 + SGL_RS09570 0.29 +0.4 1,639,191 + -0.1 1,639,374 - +0.3 1,639,537 - -0.2 1,639,539 + -0.2 1,639,799 - -0.5 1,639,909 + +1.5 1,639,914 + -0.1 1,639,914 + -0.6 1,639,962 - +0.2 1,639,984 + +0.0 1,640,002 - SGL_RS09575 0.10 -0.7 1,640,130 + SGL_RS09575 0.32 +0.1 1,640,149 - SGL_RS09575 0.36 -0.4 1,640,165 + SGL_RS09575 0.38 +0.0
Or see this region's nucleotide sequence