Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07785

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07775 and SGL_RS07780 are separated by 153 nucleotidesSGL_RS07780 and SGL_RS07785 overlap by 8 nucleotidesSGL_RS07785 and SGL_RS07790 are separated by 148 nucleotides SGL_RS07775: SGL_RS07775 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,262,049 to 1,263,260 _RS07775 SGL_RS07780: SGL_RS07780 - HNH endonuclease, at 1,263,414 to 1,263,830 _RS07780 SGL_RS07785: SGL_RS07785 - hypothetical protein, at 1,263,823 to 1,264,179 _RS07785 SGL_RS07790: SGL_RS07790 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,264,328 to 1,267,564 _RS07790 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -1 0 1at 1263.311 kb on + strandat 1263.396 kb on - strandat 1263.551 kb on + strand, within SGL_RS07780at 1263.601 kb on + strand, within SGL_RS07780at 1263.681 kb on + strand, within SGL_RS07780at 1263.857 kb on + strandat 1263.956 kb on + strand, within SGL_RS07785at 1264.111 kb on + strand, within SGL_RS07785at 1264.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,263,311 + +0.1
1,263,396 - +0.2
1,263,551 + SGL_RS07780 0.33 +0.2
1,263,601 + SGL_RS07780 0.45 -0.5
1,263,681 + SGL_RS07780 0.64 +0.3
1,263,857 + -0.9
1,263,956 + SGL_RS07785 0.37 +0.8
1,264,111 + SGL_RS07785 0.81 +0.3
1,264,180 + -0.2

Or see this region's nucleotide sequence