Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22175

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
4,235,900	+				+0.2
4,235,900	+				+1.6
4,235,904	+				+4.5
4,235,904	+				+1.7
4,235,904	+				+2.2
4,235,946	+				+1.4
4,235,946	+				+3.1
4,235,947	-				+4.2
4,235,976	-				+0.8
4,236,127	+	fabY	LU632_RS22170	0.24	+0.6
4,236,264	+	fabY	LU632_RS22170	0.39	+1.8
4,236,265	-	fabY	LU632_RS22170	0.39	+4.7
4,236,326	+	fabY	LU632_RS22170	0.45	+1.2
4,236,327	-	fabY	LU632_RS22170	0.45	-2.5
4,236,351	-	fabY	LU632_RS22170	0.48	+1.1
4,236,405	-	fabY	LU632_RS22170	0.54	+2.2
4,236,405	-	fabY	LU632_RS22170	0.54	+1.2
4,236,431	-	fabY	LU632_RS22170	0.56	-1.5
4,236,434	+	fabY	LU632_RS22170	0.57	-1.3
4,236,435	-	fabY	LU632_RS22170	0.57	+1.3
4,236,435	-	fabY	LU632_RS22170	0.57	-0.7
4,236,444	+	fabY	LU632_RS22170	0.58	-0.7
4,236,444	+	fabY	LU632_RS22170	0.58	+2.7
4,236,445	-	fabY	LU632_RS22170	0.58	-0.3
4,236,446	+	fabY	LU632_RS22170	0.58	+3.7
4,236,504	-	fabY	LU632_RS22170	0.64	+2.9
4,236,504	-	fabY	LU632_RS22170	0.64	-1.7
4,236,536	+	fabY	LU632_RS22170	0.68	+1.8
4,236,537	-	fabY	LU632_RS22170	0.68	-1.3
4,236,537	-	fabY	LU632_RS22170	0.68	+2.3
4,236,668	-	fabY	LU632_RS22170	0.82	+2.8
4,236,778	+				+1.4
4,236,779	-				+3.8
4,236,780	+				-1.7
4,236,780	+				+1.8
4,236,780	+				+0.7
4,236,780	+				+3.3
4,236,781	-				+3.6
4,236,781	-				+0.4
4,236,781	-				+0.7
4,236,781	-				-0.7
4,236,781	-				+2.0
4,236,781	-				+5.2
4,236,781	-				+1.3
4,236,781	-				+2.0
4,236,781	-				+1.7
4,236,781	-				-1.3
4,236,781	-				+3.5
4,236,781	-				-1.3
4,236,781	-				+2.7
4,236,781	-				+2.9
4,236,782	+				+3.4
4,236,782	+				-2.0
4,236,782	+				+4.3
4,236,782	+				-1.5
4,236,782	+				+1.6
4,236,782	+				-0.3
4,236,782	+				+1.6
4,236,782	+				-0.2
4,236,782	+				+2.0
4,236,782	+				+1.3
4,236,782	+				+1.7
4,236,782	+				+3.5
4,236,782	+				+2.0
4,236,782	+				+2.7
4,236,782	+				+2.9
4,236,783	-				-2.0
4,236,783	-				+5.7
4,236,783	-				+3.9
4,236,783	-				-0.3
4,236,783	-				-0.7
4,236,783	-				+0.8
4,236,815	-				+2.1
4,236,835	+				+0.1
4,236,835	+				+1.4
4,237,094	+	rluF	LU632_RS22175	0.28	-2.4
4,237,095	-	rluF	LU632_RS22175	0.28	+0.2
4,237,095	-	rluF	LU632_RS22175	0.28	-1.4
4,237,245	-	rluF	LU632_RS22175	0.45	+1.3
4,237,309	+	rluF	LU632_RS22175	0.53	-1.7
4,237,310	-	rluF	LU632_RS22175	0.53	-0.1
4,237,346	+	rluF	LU632_RS22175	0.57	+0.3
4,237,346	+	rluF	LU632_RS22175	0.57	-0.3
4,237,347	-	rluF	LU632_RS22175	0.57	+2.2
4,237,347	-	rluF	LU632_RS22175	0.57	-2.8
4,237,351	-	rluF	LU632_RS22175	0.58	+1.0
4,237,353	+	rluF	LU632_RS22175	0.58	+2.5
4,237,397	+	rluF	LU632_RS22175	0.63	-2.0
4,237,448	+	rluF	LU632_RS22175	0.69	+3.4
4,237,509	+	rluF	LU632_RS22175	0.76	-0.3
4,237,511	+	rluF	LU632_RS22175	0.76	-2.3
4,237,511	+	rluF	LU632_RS22175	0.76	+0.6
4,237,511	+	rluF	LU632_RS22175	0.76	-1.7
4,237,511	+	rluF	LU632_RS22175	0.76	+1.2
4,237,512	-	rluF	LU632_RS22175	0.76	-0.7
4,237,512	-	rluF	LU632_RS22175	0.76	+2.8
4,237,640	-				-0.7
4,237,684	+				+1.8
4,237,684	+				+1.4
4,237,684	+				+2.3
4,237,685	-				+0.3
4,237,685	-				-0.7
4,237,685	-				+1.3
4,237,685	-				-1.1
4,237,744	+				-0.3
4,237,745	-				-1.2
4,237,745	-				+2.1
4,237,857	-				-0.3
4,237,857	-				-0.6
4,237,857	-				+1.4
4,237,943	+		LU632_RS22180	0.11	+1.5
4,238,144	-		LU632_RS22180	0.23	+1.1
4,238,150	-		LU632_RS22180	0.23	-1.0
4,238,156	-		LU632_RS22180	0.24	+1.3
4,238,156	-		LU632_RS22180	0.24	+3.7
4,238,224	+		LU632_RS22180	0.28	+0.7
4,238,224	+		LU632_RS22180	0.28	+1.3
4,238,224	+		LU632_RS22180	0.28	-1.0
4,238,225	-		LU632_RS22180	0.28	+0.3
4,238,225	-		LU632_RS22180	0.28	+0.3
4,238,358	+		LU632_RS22180	0.36	-0.2
4,238,358	+		LU632_RS22180	0.36	+1.3
4,238,359	-		LU632_RS22180	0.36	+0.9
4,238,474	-		LU632_RS22180	0.43	+1.6
4,238,600	-		LU632_RS22180	0.50	+0.7
4,238,674	+		LU632_RS22180	0.54	+2.4
4,238,675	-		LU632_RS22180	0.55	-1.0