Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03300 and SGL_RS03305 are separated by 48 nucleotides SGL_RS03305 and SGL_RS03310 are separated by 19 nucleotides
SGL_RS03300: SGL_RS03300 - pilus motility taxis protein HmpF, at 303,939 to 305,546
_RS03300
SGL_RS03305: SGL_RS03305 - CO2 hydration protein, at 305,595 to 306,824
_RS03305
SGL_RS03310: SGL_RS03310 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 306,844 to 308,076
_RS03310
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1
2
3 at 305.018 kb on - strand, within SGL_RS03300 at 305.468 kb on + strand at 306.266 kb on - strand, within SGL_RS03305 at 306.380 kb on + strand, within SGL_RS03305 at 306.393 kb on - strand, within SGL_RS03305 at 306.406 kb on + strand, within SGL_RS03305 at 306.499 kb on - strand, within SGL_RS03305 at 306.688 kb on + strand, within SGL_RS03305 at 306.696 kb on + strand, within SGL_RS03305 at 306.803 kb on + strand at 306.812 kb on - strand at 306.899 kb on + strand at 306.915 kb on - strand at 307.164 kb on + strand, within SGL_RS03310 at 307.164 kb on + strand, within SGL_RS03310 at 307.164 kb on + strand, within SGL_RS03310 at 307.174 kb on - strand, within SGL_RS03310 at 307.207 kb on + strand, within SGL_RS03310 at 307.216 kb on - strand, within SGL_RS03310 at 307.245 kb on - strand, within SGL_RS03310 at 307.433 kb on + strand, within SGL_RS03310 at 307.441 kb on - strand, within SGL_RS03310 at 307.571 kb on - strand, within SGL_RS03310 at 307.608 kb on - strand, within SGL_RS03310 at 307.670 kb on - strand, within SGL_RS03310 at 307.687 kb on - strand, within SGL_RS03310 at 307.725 kb on + strand, within SGL_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 305,018 - SGL_RS03300 0.67 +2.5 305,468 + +1.7 306,266 - SGL_RS03305 0.55 +2.6 306,380 + SGL_RS03305 0.64 +2.8 306,393 - SGL_RS03305 0.65 +3.0 306,406 + SGL_RS03305 0.66 +2.6 306,499 - SGL_RS03305 0.73 +2.4 306,688 + SGL_RS03305 0.89 +2.9 306,696 + SGL_RS03305 0.90 +2.3 306,803 + +0.2 306,812 - +1.4 306,899 + -0.9 306,915 - +0.9 307,164 + SGL_RS03310 0.26 +0.8 307,164 + SGL_RS03310 0.26 +0.2 307,164 + SGL_RS03310 0.26 +0.1 307,174 - SGL_RS03310 0.27 +0.4 307,207 + SGL_RS03310 0.29 -0.7 307,216 - SGL_RS03310 0.30 -0.9 307,245 - SGL_RS03310 0.33 +0.0 307,433 + SGL_RS03310 0.48 -0.9 307,441 - SGL_RS03310 0.48 +0.1 307,571 - SGL_RS03310 0.59 +0.3 307,608 - SGL_RS03310 0.62 -0.2 307,670 - SGL_RS03310 0.67 +0.2 307,687 - SGL_RS03310 0.68 +0.4 307,725 + SGL_RS03310 0.71 +0.7
Or see this region's nucleotide sequence