Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5398

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,401,644	-		GFF5397	0.17	-2.4
2,401,688	+		GFF5397	0.26	-3.3
2,401,689	-		GFF5397	0.27	-1.0
2,402,304	+				+1.3
2,402,330	+				+1.2
2,402,567	+				-2.9
2,402,567	+				-1.0
2,402,687	+		GFF5398	0.12	-2.2
2,402,901	-		GFF5398	0.22	-1.6
2,402,901	-		GFF5398	0.22	-1.4
2,403,002	+		GFF5398	0.27	-2.2
2,403,522	+		GFF5398	0.52	-3.4
2,403,705	-		GFF5398	0.61	-3.3
2,403,965	+		GFF5398	0.74	-5.4
2,403,965	+		GFF5398	0.74	-1.6
2,403,965	+		GFF5398	0.74	-5.0
2,403,969	-		GFF5398	0.74	-2.0
2,404,486	-				-1.6
2,404,604	-				+1.1
2,404,604	-				+0.8
2,404,742	-		GFF5399	0.10	+0.6
2,404,895	-		GFF5399	0.17	-0.0
2,404,895	-		GFF5399	0.17	+0.3
2,405,059	+		GFF5399	0.25	-0.0
2,405,060	-		GFF5399	0.25	+0.4
2,405,446	+		GFF5399	0.42	-3.0
2,405,446	+		GFF5399	0.42	+1.8
2,405,446	+		GFF5399	0.42	+1.8
2,405,447	-		GFF5399	0.42	+0.6
2,405,447	-		GFF5399	0.42	+0.7
2,405,447	-		GFF5399	0.42	-0.9