Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3798 and GFF3799 are separated by 10 nucleotides GFF3799 and GFF3800 are separated by 9 nucleotides GFF3800 and GFF3801 are separated by 2 nucleotides GFF3801 and GFF3802 are separated by 1 nucleotides
GFF3798 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 698,131 to 699,165
GFF3798
GFF3799 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17), at 699,176 to 699,859
GFF3799
GFF3800 - 2-pyrone-4,6-dicarboxylic acid hydrolase, at 699,869 to 700,801
GFF3800
GFF3801 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 700,804 to 701,229
GFF3801
GFF3802 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 701,231 to 702,097
GFF3802
Position (kb) 699
700
701 Strain fitness (log2 ratio) -1
0
1
2 at 699.031 kb on + strand, within GFF3798 at 699.032 kb on - strand, within GFF3798 at 699.034 kb on + strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.052 kb on + strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.055 kb on - strand, within GFF3798 at 699.100 kb on + strand at 699.101 kb on - strand at 699.101 kb on - strand at 699.101 kb on - strand at 699.163 kb on + strand at 699.164 kb on - strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.180 kb on - strand at 699.303 kb on - strand, within GFF3799 at 699.303 kb on - strand, within GFF3799 at 699.317 kb on + strand, within GFF3799 at 699.318 kb on - strand, within GFF3799 at 699.318 kb on - strand, within GFF3799 at 699.459 kb on - strand, within GFF3799 at 699.810 kb on - strand at 699.810 kb on - strand at 699.810 kb on - strand at 699.848 kb on + strand at 699.848 kb on + strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 700.032 kb on - strand, within GFF3800 at 700.032 kb on - strand, within GFF3800 at 700.064 kb on + strand, within GFF3800 at 700.355 kb on + strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.255 kb on + strand at 701.256 kb on - strand at 701.256 kb on - strand at 701.315 kb on + strand at 701.315 kb on + strand at 701.340 kb on - strand, within GFF3802 at 701.397 kb on - strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.772 kb on - strand, within GFF3802
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 699,031 + GFF3798 0.87 -1.1 699,032 - GFF3798 0.87 -1.0 699,034 + GFF3798 0.87 -0.3 699,035 - GFF3798 0.87 -1.2 699,035 - GFF3798 0.87 +0.8 699,052 + GFF3798 0.89 -0.3 699,053 - GFF3798 0.89 -0.5 699,053 - GFF3798 0.89 -0.6 699,055 - GFF3798 0.89 +0.7 699,100 + +0.1 699,101 - -1.0 699,101 - -1.3 699,101 - -0.6 699,163 + -0.6 699,164 - -0.2 699,179 + -0.6 699,179 + -0.6 699,179 + -0.2 699,179 + -0.0 699,179 + -0.1 699,180 - -0.3 699,303 - GFF3799 0.19 -0.7 699,303 - GFF3799 0.19 -1.0 699,317 + GFF3799 0.21 +1.8 699,318 - GFF3799 0.21 -0.7 699,318 - GFF3799 0.21 -0.3 699,459 - GFF3799 0.41 +0.6 699,810 - -0.7 699,810 - -0.4 699,810 - -0.1 699,848 + -0.1 699,848 + -0.3 699,849 - -0.3 699,849 - -0.3 699,849 - -0.4 699,849 - -0.6 699,849 - -1.3 700,032 - GFF3800 0.17 -0.8 700,032 - GFF3800 0.17 -0.8 700,064 + GFF3800 0.21 -1.3 700,355 + GFF3800 0.52 +0.3 700,356 - GFF3800 0.52 -1.7 700,356 - GFF3800 0.52 -1.2 701,041 + GFF3801 0.56 -0.1 701,041 + GFF3801 0.56 -0.3 701,041 + GFF3801 0.56 -1.5 701,042 - GFF3801 0.56 +0.3 701,042 - GFF3801 0.56 +0.5 701,042 - GFF3801 0.56 +0.3 701,255 + +0.3 701,256 - +0.6 701,256 - -0.6 701,315 + +0.4 701,315 + -0.4 701,340 - GFF3802 0.13 -0.3 701,397 - GFF3802 0.19 +0.5 701,465 + GFF3802 0.27 -0.2 701,465 + GFF3802 0.27 +2.0 701,732 + GFF3802 0.58 -0.2 701,732 + GFF3802 0.58 +0.5 701,732 + GFF3802 0.58 -0.8 701,733 - GFF3802 0.58 +1.0 701,733 - GFF3802 0.58 +0.7 701,733 - GFF3802 0.58 -0.2 701,733 - GFF3802 0.58 -0.3 701,733 - GFF3802 0.58 -0.1 701,733 - GFF3802 0.58 +1.8 701,771 + GFF3802 0.62 +0.1 701,771 + GFF3802 0.62 -1.0 701,772 - GFF3802 0.62 +0.1
Or see this region's nucleotide sequence