Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2495 and GFF2496 are separated by 23 nucleotides GFF2496 and GFF2497 are separated by 4 nucleotides GFF2497 and GFF2498 are separated by 10 nucleotides GFF2498 and GFF2499 are separated by 95 nucleotides
GFF2495 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 80,165 to 83,107
GFF2495
GFF2496 - Glutathione S-transferase (EC 2.5.1.18), at 83,131 to 83,781
GFF2496
GFF2497 - Sensor protein basS/pmrB (EC 2.7.3.-), at 83,786 to 85,270
GFF2497
GFF2498 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 85,281 to 85,955
GFF2498
GFF2499 - Transcriptional regulator, MarR family, at 86,051 to 86,548
GFF2499
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 82.970 kb on + strand at 82.970 kb on + strand at 82.970 kb on + strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 83.146 kb on + strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.260 kb on + strand, within GFF2496 at 83.261 kb on - strand, within GFF2496 at 83.519 kb on - strand, within GFF2496 at 83.533 kb on + strand, within GFF2496 at 83.620 kb on + strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.762 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.961 kb on + strand, within GFF2497 at 83.961 kb on + strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.094 kb on - strand, within GFF2497 at 84.094 kb on - strand, within GFF2497 at 84.813 kb on + strand, within GFF2497 at 84.951 kb on + strand, within GFF2497 at 84.951 kb on + strand, within GFF2497 at 84.952 kb on - strand, within GFF2497 at 84.952 kb on - strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 84.954 kb on + strand, within GFF2497 at 85.306 kb on + strand at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.375 kb on + strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.376 kb on - strand, within GFF2498 at 85.552 kb on + strand, within GFF2498 at 85.553 kb on - strand, within GFF2498 at 85.553 kb on - strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.660 kb on + strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.661 kb on - strand, within GFF2498 at 85.675 kb on + strand, within GFF2498 at 85.676 kb on - strand, within GFF2498 at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.097 kb on + strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand at 86.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 82,970 + -0.1 82,970 + -0.7 82,970 + -0.2 82,971 - -0.6 82,971 - +0.8 82,971 - -1.0 82,971 - -0.5 83,146 + +0.2 83,147 - -1.7 83,147 - -0.8 83,147 - +0.0 83,147 - +0.4 83,260 + GFF2496 0.20 -0.6 83,261 - GFF2496 0.20 +0.3 83,519 - GFF2496 0.60 -0.9 83,533 + GFF2496 0.62 +0.0 83,620 + GFF2496 0.75 +0.0 83,621 - GFF2496 0.75 +0.0 83,621 - GFF2496 0.75 +0.3 83,762 + +0.1 83,764 + +0.1 83,764 + +0.2 83,764 + -0.1 83,764 + -0.0 83,764 + -0.2 83,765 - -0.4 83,765 - +0.9 83,765 - -0.4 83,765 - +0.5 83,765 - -0.2 83,961 + GFF2497 0.12 -1.9 83,961 + GFF2497 0.12 -1.3 83,962 - GFF2497 0.12 -2.7 83,962 - GFF2497 0.12 -0.1 84,093 + GFF2497 0.21 -1.7 84,093 + GFF2497 0.21 -1.9 84,094 - GFF2497 0.21 -1.1 84,094 - GFF2497 0.21 -2.4 84,813 + GFF2497 0.69 -0.8 84,951 + GFF2497 0.78 -1.1 84,951 + GFF2497 0.78 -1.7 84,952 - GFF2497 0.79 -1.0 84,952 - GFF2497 0.79 -1.7 84,954 + GFF2497 0.79 +0.1 84,954 + GFF2497 0.79 -1.2 84,954 + GFF2497 0.79 -0.1 84,954 + GFF2497 0.79 -1.1 85,306 + -3.3 85,375 + GFF2498 0.14 -4.4 85,375 + GFF2498 0.14 -2.9 85,375 + GFF2498 0.14 -3.3 85,375 + GFF2498 0.14 -2.0 85,375 + GFF2498 0.14 -4.0 85,376 - GFF2498 0.14 -4.0 85,376 - GFF2498 0.14 -2.7 85,376 - GFF2498 0.14 -2.4 85,552 + GFF2498 0.40 -2.4 85,553 - GFF2498 0.40 -4.4 85,553 - GFF2498 0.40 -1.3 85,660 + GFF2498 0.56 -3.9 85,660 + GFF2498 0.56 -1.1 85,660 + GFF2498 0.56 -2.7 85,661 - GFF2498 0.56 -1.7 85,661 - GFF2498 0.56 -4.1 85,661 - GFF2498 0.56 -2.4 85,661 - GFF2498 0.56 -3.3 85,675 + GFF2498 0.58 -3.6 85,676 - GFF2498 0.59 -3.6 86,097 + -0.2 86,097 + -0.3 86,097 + -0.2 86,097 + -0.1 86,097 + +0.1 86,097 + -0.1 86,098 - -0.0 86,098 - -1.0 86,098 - -0.3 86,098 - -0.4
Or see this region's nucleotide sequence