Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1788

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1787 and GFF1788 are separated by 5 nucleotidesGFF1788 and GFF1789 are separated by 43 nucleotides GFF1787 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 650,891 to 653,179 GFF1787 GFF1788 - Probable proline rich signal peptide protein, at 653,185 to 653,862 GFF1788 GFF1789 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 653,906 to 655,201 GFF1789 Position (kb) 653 654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 652.218 kb on + strand, within GFF1787at 652.218 kb on + strand, within GFF1787at 652.218 kb on + strand, within GFF1787at 652.218 kb on + strand, within GFF1787at 652.218 kb on + strand, within GFF1787at 652.218 kb on + strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.219 kb on - strand, within GFF1787at 652.260 kb on + strand, within GFF1787at 652.260 kb on + strand, within GFF1787at 652.260 kb on + strand, within GFF1787at 652.261 kb on - strand, within GFF1787at 652.336 kb on - strand, within GFF1787at 652.336 kb on - strand, within GFF1787at 652.507 kb on + strand, within GFF1787at 652.507 kb on + strand, within GFF1787at 652.508 kb on - strand, within GFF1787at 652.800 kb on + strand, within GFF1787at 652.801 kb on - strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.812 kb on + strand, within GFF1787at 652.813 kb on - strand, within GFF1787at 652.813 kb on - strand, within GFF1787at 652.813 kb on - strand, within GFF1787at 652.998 kb on + strandat 652.999 kb on - strandat 652.999 kb on - strandat 652.999 kb on - strandat 653.510 kb on + strand, within GFF1788at 653.510 kb on + strand, within GFF1788at 653.511 kb on - strand, within GFF1788at 653.511 kb on - strand, within GFF1788at 653.511 kb on - strand, within GFF1788at 653.588 kb on + strand, within GFF1788at 653.588 kb on + strand, within GFF1788at 653.639 kb on + strand, within GFF1788at 653.654 kb on + strand, within GFF1788at 653.678 kb on + strand, within GFF1788at 653.678 kb on + strand, within GFF1788at 653.679 kb on - strand, within GFF1788at 653.679 kb on - strand, within GFF1788at 653.679 kb on - strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.696 kb on + strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.697 kb on - strand, within GFF1788at 653.934 kb on + strandat 653.949 kb on + strandat 653.949 kb on + strandat 653.949 kb on + strandat 653.949 kb on + strandat 653.949 kb on + strandat 653.950 kb on - strandat 653.950 kb on - strandat 653.950 kb on - strandat 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.105 kb on + strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.106 kb on - strand, within GFF1789at 654.660 kb on + strand, within GFF1789

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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652,218 + GFF1787 0.58 -3.2
652,218 + GFF1787 0.58 -2.8
652,218 + GFF1787 0.58 -1.6
652,218 + GFF1787 0.58 -1.1
652,218 + GFF1787 0.58 -2.6
652,218 + GFF1787 0.58 -1.6
652,219 - GFF1787 0.58 -3.1
652,219 - GFF1787 0.58 -0.8
652,219 - GFF1787 0.58 -1.1
652,219 - GFF1787 0.58 -1.1
652,219 - GFF1787 0.58 -1.4
652,219 - GFF1787 0.58 +0.4
652,219 - GFF1787 0.58 -2.6
652,219 - GFF1787 0.58 -2.2
652,219 - GFF1787 0.58 -1.9
652,219 - GFF1787 0.58 -1.6
652,219 - GFF1787 0.58 -2.6
652,219 - GFF1787 0.58 -3.3
652,260 + GFF1787 0.60 -2.5
652,260 + GFF1787 0.60 -3.3
652,260 + GFF1787 0.60 -2.9
652,261 - GFF1787 0.60 -2.4
652,336 - GFF1787 0.63 -2.1
652,336 - GFF1787 0.63 +0.4
652,507 + GFF1787 0.71 -2.4
652,507 + GFF1787 0.71 -1.5
652,508 - GFF1787 0.71 -0.1
652,800 + GFF1787 0.83 -1.1
652,801 - GFF1787 0.83 -1.8
652,812 + GFF1787 0.84 -3.4
652,812 + GFF1787 0.84 -3.1
652,812 + GFF1787 0.84 -0.9
652,812 + GFF1787 0.84 -1.1
652,812 + GFF1787 0.84 -1.1
652,812 + GFF1787 0.84 -1.5
652,812 + GFF1787 0.84 -3.0
652,812 + GFF1787 0.84 -2.6
652,812 + GFF1787 0.84 -2.4
652,812 + GFF1787 0.84 -1.5
652,813 - GFF1787 0.84 -2.4
652,813 - GFF1787 0.84 -4.0
652,813 - GFF1787 0.84 -2.4
652,998 + -2.6
652,999 - -2.1
652,999 - -2.4
652,999 - -0.9
653,510 + GFF1788 0.48 -1.6
653,510 + GFF1788 0.48 -2.9
653,511 - GFF1788 0.48 -3.4
653,511 - GFF1788 0.48 +0.4
653,511 - GFF1788 0.48 -2.2
653,588 + GFF1788 0.59 -4.0
653,588 + GFF1788 0.59 -1.8
653,639 + GFF1788 0.67 -1.1
653,654 + GFF1788 0.69 -2.8
653,678 + GFF1788 0.73 -1.9
653,678 + GFF1788 0.73 -2.0
653,679 - GFF1788 0.73 -3.2
653,679 - GFF1788 0.73 -1.5
653,679 - GFF1788 0.73 -3.6
653,696 + GFF1788 0.75 -0.6
653,696 + GFF1788 0.75 -0.6
653,696 + GFF1788 0.75 -1.6
653,696 + GFF1788 0.75 -1.1
653,696 + GFF1788 0.75 -3.3
653,696 + GFF1788 0.75 +0.4
653,696 + GFF1788 0.75 -2.4
653,697 - GFF1788 0.76 -1.9
653,697 - GFF1788 0.76 -2.4
653,697 - GFF1788 0.76 -2.2
653,697 - GFF1788 0.76 -2.5
653,697 - GFF1788 0.76 -3.2
653,697 - GFF1788 0.76 -3.3
653,697 - GFF1788 0.76 -2.6
653,697 - GFF1788 0.76 -2.5
653,697 - GFF1788 0.76 -1.1
653,934 + -0.5
653,949 + +0.4
653,949 + -0.5
653,949 + -0.1
653,949 + +0.1
653,949 + +0.5
653,950 - -0.4
653,950 - -0.8
653,950 - +0.2
654,105 + GFF1789 0.15 -0.1
654,105 + GFF1789 0.15 +0.2
654,105 + GFF1789 0.15 -0.8
654,105 + GFF1789 0.15 -0.1
654,105 + GFF1789 0.15 -0.3
654,105 + GFF1789 0.15 -0.7
654,105 + GFF1789 0.15 +1.5
654,105 + GFF1789 0.15 +0.8
654,106 - GFF1789 0.15 +0.1
654,106 - GFF1789 0.15 +0.1
654,106 - GFF1789 0.15 -0.4
654,106 - GFF1789 0.15 -0.1
654,106 - GFF1789 0.15 +0.9
654,106 - GFF1789 0.15 -0.3
654,106 - GFF1789 0.15 -0.5
654,660 + GFF1789 0.58 +0.5

Or see this region's nucleotide sequence