Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1193 and GFF1194 are separated by 17 nucleotides GFF1194 and GFF1195 are separated by 422 nucleotides GFF1195 and GFF1196 are separated by 16 nucleotides
GFF1193 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 49,887 to 52,856
GFF1193
GFF1194 - Formate dehydrogenase subunit or accessory protein, at 52,874 to 53,107
GFF1194
GFF1195 - Sigma-54 dependent response regulator, at 53,530 to 54,912
GFF1195
GFF1196 - Signal transduction histidine kinase, at 54,929 to 57,040
GFF1196
Position (kb) 53
54
55 Strain fitness (log2 ratio) -1
0
1 at 52.893 kb on + strand at 52.893 kb on + strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.897 kb on - strand at 52.897 kb on - strand at 52.897 kb on - strand at 52.923 kb on + strand, within GFF1194 at 53.161 kb on + strand at 53.162 kb on - strand at 53.172 kb on + strand at 53.172 kb on + strand at 53.173 kb on - strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.205 kb on + strand at 53.376 kb on - strand at 53.488 kb on - strand at 53.509 kb on + strand at 53.509 kb on + strand at 53.510 kb on - strand at 53.510 kb on - strand at 53.510 kb on - strand at 53.517 kb on - strand at 53.932 kb on + strand, within GFF1195 at 53.933 kb on - strand, within GFF1195 at 53.933 kb on - strand, within GFF1195 at 54.280 kb on + strand, within GFF1195 at 54.281 kb on - strand, within GFF1195 at 54.281 kb on - strand, within GFF1195 at 54.484 kb on + strand, within GFF1195 at 54.484 kb on + strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.485 kb on - strand, within GFF1195 at 54.643 kb on + strand, within GFF1195 at 54.728 kb on - strand, within GFF1195 at 55.061 kb on + strand at 55.062 kb on - strand at 55.062 kb on - strand at 55.062 kb on - strand at 55.062 kb on - strand at 55.116 kb on - strand at 55.116 kb on - strand at 55.120 kb on - strand at 55.181 kb on + strand, within GFF1196 at 55.181 kb on + strand, within GFF1196 at 55.182 kb on - strand, within GFF1196 at 55.182 kb on - strand, within GFF1196 at 55.182 kb on - strand, within GFF1196 at 55.283 kb on + strand, within GFF1196 at 55.284 kb on - strand, within GFF1196 at 55.284 kb on - strand, within GFF1196 at 55.668 kb on - strand, within GFF1196 at 55.863 kb on - strand, within GFF1196 at 55.863 kb on - strand, within GFF1196 at 55.863 kb on - strand, within GFF1196 at 55.863 kb on - strand, within GFF1196
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 52,893 + -1.0 52,893 + +0.4 52,894 - -0.3 52,894 - -1.0 52,894 - +0.8 52,894 - -1.0 52,894 - -0.0 52,894 - +0.2 52,894 - +0.1 52,896 + -0.6 52,896 + +0.2 52,896 + -0.1 52,896 + -0.1 52,896 + +0.8 52,897 - -0.4 52,897 - +0.2 52,897 - +0.5 52,923 + GFF1194 0.21 -1.1 53,161 + +1.0 53,162 - -1.0 53,172 + -0.6 53,172 + -0.0 53,173 - -0.6 53,190 + +0.5 53,190 + +0.1 53,190 + -0.3 53,190 + -0.4 53,190 + +0.1 53,190 + +1.0 53,190 + +0.3 53,190 + -1.0 53,190 + -0.3 53,190 + -0.5 53,191 - -0.0 53,191 - +0.3 53,191 - -0.5 53,191 - -0.0 53,191 - +0.6 53,191 - -0.6 53,191 - +0.2 53,191 - -0.2 53,191 - +0.8 53,191 - +0.7 53,191 - +0.2 53,205 + +0.0 53,376 - +1.2 53,488 - -0.3 53,509 + +0.5 53,509 + -0.3 53,510 - +0.8 53,510 - -0.8 53,510 - +0.0 53,517 - -0.3 53,932 + GFF1195 0.29 +1.1 53,933 - GFF1195 0.29 +0.4 53,933 - GFF1195 0.29 +0.6 54,280 + GFF1195 0.54 -0.5 54,281 - GFF1195 0.54 +1.0 54,281 - GFF1195 0.54 +0.0 54,484 + GFF1195 0.69 -0.6 54,484 + GFF1195 0.69 +0.1 54,485 - GFF1195 0.69 +0.4 54,485 - GFF1195 0.69 +1.0 54,485 - GFF1195 0.69 +0.3 54,485 - GFF1195 0.69 +0.5 54,485 - GFF1195 0.69 +0.8 54,485 - GFF1195 0.69 -0.6 54,485 - GFF1195 0.69 +0.2 54,643 + GFF1195 0.80 +0.2 54,728 - GFF1195 0.87 -0.8 55,061 + +1.0 55,062 - +0.4 55,062 - +0.5 55,062 - +0.5 55,062 - -0.2 55,116 - +0.4 55,116 - -0.6 55,120 - -0.2 55,181 + GFF1196 0.12 -0.0 55,181 + GFF1196 0.12 +0.0 55,182 - GFF1196 0.12 -0.2 55,182 - GFF1196 0.12 +0.1 55,182 - GFF1196 0.12 -0.0 55,283 + GFF1196 0.17 -0.7 55,284 - GFF1196 0.17 +0.1 55,284 - GFF1196 0.17 +0.6 55,668 - GFF1196 0.35 -0.2 55,863 - GFF1196 0.44 +0.8 55,863 - GFF1196 0.44 -0.2 55,863 - GFF1196 0.44 +0.5 55,863 - GFF1196 0.44 +0.8
Or see this region's nucleotide sequence