Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09095

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
1,709,420	-	pgl	LU632_RS09085	0.57	+0.3
1,709,420	-	pgl	LU632_RS09085	0.57	-1.4
1,709,859	-				+0.6
1,709,907	+				+0.6
1,709,950	+		LU632_RS09090	0.13	+0.6
1,709,953	+		LU632_RS09090	0.13	-0.0
1,709,964	+		LU632_RS09090	0.16	-0.1
1,710,016	-		LU632_RS09090	0.26	+0.4
1,710,028	+		LU632_RS09090	0.29	+0.7
1,710,030	+		LU632_RS09090	0.29	-1.7
1,710,102	-		LU632_RS09090	0.44	-0.7
1,710,176	-		LU632_RS09090	0.59	+1.4
1,710,176	-		LU632_RS09090	0.59	-1.5
1,710,176	-		LU632_RS09090	0.59	-0.7
1,710,180	-		LU632_RS09090	0.60	-0.9
1,710,180	-		LU632_RS09090	0.60	-2.0
1,710,180	-		LU632_RS09090	0.60	+0.5
1,710,364	+				+2.2
1,710,589	+		LU632_RS09095	0.29	+1.0
1,710,590	-		LU632_RS09095	0.29	-0.5
1,710,706	-		LU632_RS09095	0.46	+1.0
1,710,978	+		LU632_RS09095	0.86	+0.5
1,710,978	+		LU632_RS09095	0.86	+0.6
1,710,979	-		LU632_RS09095	0.86	-0.2
1,710,979	-		LU632_RS09095	0.86	-0.1
1,710,979	-		LU632_RS09095	0.86	+0.4
1,710,981	+		LU632_RS09095	0.86	+0.6
1,711,107	+				+0.2
1,711,142	+				-0.7
1,711,181	+				+3.4
1,711,182	-				-0.1
1,711,185	-				-0.5
1,711,235	+		LU632_RS09100	0.15	-1.1
1,711,261	+		LU632_RS09100	0.17	+1.9
1,711,302	-		LU632_RS09100	0.21	-0.3
1,711,365	-		LU632_RS09100	0.27	-1.2
1,711,459	+		LU632_RS09100	0.36	+0.3
1,711,545	+		LU632_RS09100	0.44	-0.4
1,711,597	+		LU632_RS09100	0.49	+0.3
1,711,597	+		LU632_RS09100	0.49	+1.4
1,711,597	+		LU632_RS09100	0.49	-0.1
1,711,598	-		LU632_RS09100	0.49	+1.9
1,711,613	+		LU632_RS09100	0.51	+0.1
1,711,710	-		LU632_RS09100	0.60	+0.6
1,711,711	+		LU632_RS09100	0.60	-0.0
1,711,712	-		LU632_RS09100	0.60	-0.4
1,711,763	+		LU632_RS09100	0.65	+0.6
1,711,764	-		LU632_RS09100	0.65	-0.4
1,711,859	-		LU632_RS09100	0.74	-0.5
1,711,905	+		LU632_RS09100	0.79	+0.1
1,711,906	-		LU632_RS09100	0.79	+0.8
1,711,917	+		LU632_RS09100	0.80	+0.8
1,711,918	-		LU632_RS09100	0.80	+0.3
1,711,937	-		LU632_RS09100	0.82	+2.9
1,711,937	-		LU632_RS09100	0.82	+0.8
1,711,967	+		LU632_RS09100	0.85	+0.8
1,711,967	-		LU632_RS09100	0.85	-0.2
1,711,968	-		LU632_RS09100	0.85	-0.2
1,711,968	-		LU632_RS09100	0.85	+2.4
1,711,969	+		LU632_RS09100	0.85	+2.0
1,711,969	+		LU632_RS09100	0.85	+0.5