Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2447

Experiment: Ying_sugar7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2445 and GFF2446 are separated by 93 nucleotidesGFF2446 and GFF2447 are separated by 403 nucleotidesGFF2447 and GFF2448 overlap by 4 nucleotidesGFF2448 and GFF2449 are separated by 6 nucleotides GFF2445 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 26,028 to 26,840 GFF2445 GFF2446 - RNA-binding protein, at 26,934 to 27,341 GFF2446 GFF2447 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 27,745 to 28,914 GFF2447 GFF2448 - Methionine biosynthesis protein MetW, at 28,911 to 29,492 GFF2448 GFF2449 - Transglutaminase-like domain, at 29,499 to 30,188 GFF2449 Position (kb) 27 28 29Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 26.938 kb on + strandat 26.989 kb on + strand, within GFF2446at 27.265 kb on + strand, within GFF2446at 27.266 kb on - strand, within GFF2446at 27.325 kb on + strandat 27.325 kb on + strandat 27.325 kb on + strandat 27.354 kb on + strandat 27.357 kb on + strandat 27.373 kb on - strandat 27.488 kb on + strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.491 kb on + strandat 27.496 kb on - strandat 27.540 kb on - strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.656 kb on - strandat 27.656 kb on - strandat 27.817 kb on + strandat 27.838 kb on + strandat 27.838 kb on + strandat 27.839 kb on - strandat 27.839 kb on - strandat 27.839 kb on - strandat 28.009 kb on + strand, within GFF2447at 28.009 kb on + strand, within GFF2447at 28.010 kb on - strand, within GFF2447at 28.238 kb on - strand, within GFF2447at 28.364 kb on - strand, within GFF2447at 28.364 kb on - strand, within GFF2447at 28.429 kb on + strand, within GFF2447at 28.519 kb on + strand, within GFF2447at 28.519 kb on + strand, within GFF2447at 28.520 kb on - strand, within GFF2447at 28.525 kb on + strand, within GFF2447at 28.526 kb on - strand, within GFF2447at 28.561 kb on + strand, within GFF2447at 28.561 kb on + strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.562 kb on - strand, within GFF2447at 28.594 kb on + strand, within GFF2447at 28.594 kb on + strand, within GFF2447at 28.613 kb on - strand, within GFF2447at 28.613 kb on - strand, within GFF2447at 28.613 kb on - strand, within GFF2447at 28.613 kb on - strand, within GFF2447at 28.639 kb on + strand, within GFF2447at 28.639 kb on + strand, within GFF2447at 28.640 kb on - strand, within GFF2447at 28.640 kb on - strand, within GFF2447at 28.640 kb on - strand, within GFF2447at 28.801 kb on + strandat 28.801 kb on + strandat 28.801 kb on + strandat 28.802 kb on - strandat 28.802 kb on - strandat 29.037 kb on + strand, within GFF2448at 29.116 kb on + strand, within GFF2448at 29.319 kb on + strand, within GFF2448at 29.320 kb on - strand, within GFF2448at 29.320 kb on - strand, within GFF2448at 29.320 kb on - strand, within GFF2448at 29.320 kb on - strand, within GFF2448at 29.320 kb on - strand, within GFF2448at 29.329 kb on - strand, within GFF2448at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.650 kb on + strand, within GFF2449at 29.651 kb on - strand, within GFF2449at 29.689 kb on + strand, within GFF2449at 29.689 kb on + strand, within GFF2449at 29.689 kb on + strand, within GFF2449at 29.689 kb on + strand, within GFF2449at 29.690 kb on - strand, within GFF2449

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3
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26,938 + -0.8
26,989 + GFF2446 0.13 +0.7
27,265 + GFF2446 0.81 +1.4
27,266 - GFF2446 0.81 +0.7
27,325 + +1.6
27,325 + +2.0
27,325 + -0.7
27,354 + +1.1
27,357 + +1.0
27,373 - +1.1
27,488 + +1.0
27,489 - +1.6
27,489 - +0.2
27,489 - +1.3
27,489 - +1.0
27,491 + +1.1
27,496 - +1.0
27,540 - +0.4
27,611 + +1.2
27,611 + +1.1
27,611 + -0.1
27,612 - +0.5
27,612 - +0.5
27,612 - +0.6
27,612 - +0.5
27,612 - +0.0
27,612 - -0.1
27,612 - +0.4
27,612 - -1.3
27,612 - +0.1
27,612 - -0.7
27,612 - -0.0
27,613 + +0.1
27,613 + +1.0
27,613 + +1.1
27,613 + +0.5
27,614 - +0.2
27,614 - -0.0
27,614 - -0.6
27,614 - +0.6
27,614 - -0.5
27,614 - +0.6
27,614 - +0.1
27,656 - -0.5
27,656 - +0.2
27,817 + -4.5
27,838 + -4.3
27,838 + -1.4
27,839 - -3.5
27,839 - -5.9
27,839 - -1.7
28,009 + GFF2447 0.23 -6.2
28,009 + GFF2447 0.23 -1.4
28,010 - GFF2447 0.23 -3.7
28,238 - GFF2447 0.42 -3.2
28,364 - GFF2447 0.53 -2.2
28,364 - GFF2447 0.53 -1.4
28,429 + GFF2447 0.58 -2.8
28,519 + GFF2447 0.66 -3.4
28,519 + GFF2447 0.66 -0.9
28,520 - GFF2447 0.66 -1.9
28,525 + GFF2447 0.67 -2.5
28,526 - GFF2447 0.67 -1.7
28,561 + GFF2447 0.70 -2.7
28,561 + GFF2447 0.70 -3.3
28,562 - GFF2447 0.70 -2.7
28,562 - GFF2447 0.70 -1.9
28,562 - GFF2447 0.70 -2.9
28,562 - GFF2447 0.70 +0.6
28,562 - GFF2447 0.70 -4.2
28,562 - GFF2447 0.70 -5.4
28,594 + GFF2447 0.73 -2.9
28,594 + GFF2447 0.73 -3.3
28,613 - GFF2447 0.74 -3.7
28,613 - GFF2447 0.74 -0.4
28,613 - GFF2447 0.74 -3.5
28,613 - GFF2447 0.74 -1.9
28,639 + GFF2447 0.76 -1.9
28,639 + GFF2447 0.76 -1.7
28,640 - GFF2447 0.76 -3.4
28,640 - GFF2447 0.76 -4.5
28,640 - GFF2447 0.76 -3.4
28,801 + -2.5
28,801 + -1.9
28,801 + -6.5
28,802 - -1.7
28,802 - -3.3
29,037 + GFF2448 0.22 +0.1
29,116 + GFF2448 0.35 -0.4
29,319 + GFF2448 0.70 -0.1
29,320 - GFF2448 0.70 +0.1
29,320 - GFF2448 0.70 -0.0
29,320 - GFF2448 0.70 +0.1
29,320 - GFF2448 0.70 +1.6
29,320 - GFF2448 0.70 +0.1
29,329 - GFF2448 0.72 -0.1
29,650 + GFF2449 0.22 -2.4
29,650 + GFF2449 0.22 +0.4
29,650 + GFF2449 0.22 -1.2
29,650 + GFF2449 0.22 -0.3
29,650 + GFF2449 0.22 -0.4
29,650 + GFF2449 0.22 +0.3
29,650 + GFF2449 0.22 +0.4
29,651 - GFF2449 0.22 +0.1
29,689 + GFF2449 0.28 +0.5
29,689 + GFF2449 0.28 +0.5
29,689 + GFF2449 0.28 +0.1
29,689 + GFF2449 0.28 +0.6
29,690 - GFF2449 0.28 +0.7

Or see this region's nucleotide sequence