Strain Fitness in Erwinia amylovora T8 around OLJFJH_12785

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_12780 and OLJFJH_12785 overlap by 1 nucleotidesOLJFJH_12785 and OLJFJH_12790 are separated by 67 nucleotides OLJFJH_12780: OLJFJH_12780 - flagellar biosynthesis protein FlhA, at 2,692,501 to 2,694,588 _12780 OLJFJH_12785: OLJFJH_12785 - flagellar protein FlhE, at 2,694,588 to 2,694,980 _12785 OLJFJH_12790: OLJFJH_12790 - arginine--tRNA ligase, at 2,695,048 to 2,696,778 _12790 Position (kb) 2694 2695Strain fitness (log2 ratio) -1 0 1 2at 2693.739 kb on + strand, within OLJFJH_12780at 2693.740 kb on - strand, within OLJFJH_12780at 2693.918 kb on + strand, within OLJFJH_12780at 2693.947 kb on - strand, within OLJFJH_12780at 2694.124 kb on - strand, within OLJFJH_12780at 2694.124 kb on - strand, within OLJFJH_12780at 2694.128 kb on + strand, within OLJFJH_12780at 2694.128 kb on + strand, within OLJFJH_12780at 2694.128 kb on + strand, within OLJFJH_12780at 2694.129 kb on - strand, within OLJFJH_12780at 2694.169 kb on - strand, within OLJFJH_12780at 2694.767 kb on + strand, within OLJFJH_12785at 2694.866 kb on - strand, within OLJFJH_12785at 2694.893 kb on - strand, within OLJFJH_12785at 2694.972 kb on + strandat 2694.972 kb on + strandat 2694.973 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6
remove
2,693,739 + OLJFJH_12780 0.59 -0.5
2,693,740 - OLJFJH_12780 0.59 -0.3
2,693,918 + OLJFJH_12780 0.68 +1.5
2,693,947 - OLJFJH_12780 0.69 +2.2
2,694,124 - OLJFJH_12780 0.78 +0.4
2,694,124 - OLJFJH_12780 0.78 -0.8
2,694,128 + OLJFJH_12780 0.78 +0.4
2,694,128 + OLJFJH_12780 0.78 -0.6
2,694,128 + OLJFJH_12780 0.78 -0.8
2,694,129 - OLJFJH_12780 0.78 +0.1
2,694,169 - OLJFJH_12780 0.80 +0.0
2,694,767 + OLJFJH_12785 0.46 +2.7
2,694,866 - OLJFJH_12785 0.71 +0.6
2,694,893 - OLJFJH_12785 0.78 -1.0
2,694,972 + -1.5
2,694,972 + -0.1
2,694,973 - -0.1

Or see this region's nucleotide sequence