Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08885

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08880 and A4249_RS08885 are separated by 183 nucleotidesA4249_RS08885 and A4249_RS08890 are separated by 116 nucleotidesA4249_RS08890 and A4249_RS08895 overlap by 4 nucleotides A4249_RS08880: A4249_RS08880 - DUF1013 domain-containing protein, at 1,778,552 to 1,779,217 _RS08880 A4249_RS08885: A4249_RS08885 - DUF465 domain-containing protein, at 1,779,401 to 1,779,574 _RS08885 A4249_RS08890: A4249_RS08890 - UbiX family flavin prenyltransferase, at 1,779,691 to 1,780,293 _RS08890 A4249_RS08895: A4249_RS08895 - TIGR02444 family protein, at 1,780,290 to 1,780,754 _RS08895 Position (kb) 1779 1780Strain fitness (log2 ratio) -1 0 1 2at 1778.406 kb on + strandat 1778.407 kb on - strandat 1778.408 kb on + strandat 1778.408 kb on + strandat 1778.409 kb on - strandat 1778.409 kb on - strandat 1779.280 kb on + strandat 1779.280 kb on + strandat 1779.280 kb on + strandat 1779.280 kb on + strandat 1779.280 kb on + strandat 1779.402 kb on + strandat 1779.402 kb on + strandat 1779.403 kb on - strandat 1779.403 kb on - strandat 1779.500 kb on - strand, within A4249_RS08885at 1779.541 kb on + strand, within A4249_RS08885at 1779.556 kb on + strand, within A4249_RS08885at 1779.556 kb on + strand, within A4249_RS08885at 1779.604 kb on + strandat 1779.604 kb on + strandat 1779.604 kb on + strandat 1779.604 kb on + strandat 1779.604 kb on + strandat 1779.605 kb on - strandat 1779.634 kb on + strandat 1779.634 kb on + strandat 1779.634 kb on + strandat 1779.634 kb on + strandat 1779.635 kb on - strandat 1779.635 kb on - strandat 1779.635 kb on - strandat 1780.321 kb on - strandat 1780.321 kb on - strandat 1780.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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1,778,406 + -1.2
1,778,407 - +0.2
1,778,408 + +1.9
1,778,408 + +0.4
1,778,409 - +0.7
1,778,409 - +0.7
1,779,280 + -1.0
1,779,280 + +0.2
1,779,280 + -0.2
1,779,280 + -0.1
1,779,280 + -0.2
1,779,402 + -1.6
1,779,402 + -0.8
1,779,403 - +0.8
1,779,403 - -0.3
1,779,500 - A4249_RS08885 0.57 -0.6
1,779,541 + A4249_RS08885 0.80 +0.5
1,779,556 + A4249_RS08885 0.89 -0.3
1,779,556 + A4249_RS08885 0.89 +0.3
1,779,604 + -0.7
1,779,604 + -0.0
1,779,604 + +0.2
1,779,604 + +0.1
1,779,604 + +1.5
1,779,605 - -0.4
1,779,634 + -0.2
1,779,634 + -0.1
1,779,634 + +0.4
1,779,634 + +0.1
1,779,635 - -0.5
1,779,635 - +0.3
1,779,635 - -1.3
1,780,321 - -0.1
1,780,321 - +0.1
1,780,321 - +0.1

Or see this region's nucleotide sequence