Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS08880 and A4249_RS08885 are separated by 183 nucleotides A4249_RS08885 and A4249_RS08890 are separated by 116 nucleotides A4249_RS08890 and A4249_RS08895 overlap by 4 nucleotides
A4249_RS08880: A4249_RS08880 - DUF1013 domain-containing protein, at 1,778,552 to 1,779,217
_RS08880
A4249_RS08885: A4249_RS08885 - DUF465 domain-containing protein, at 1,779,401 to 1,779,574
_RS08885
A4249_RS08890: A4249_RS08890 - UbiX family flavin prenyltransferase, at 1,779,691 to 1,780,293
_RS08890
A4249_RS08895: A4249_RS08895 - TIGR02444 family protein, at 1,780,290 to 1,780,754
_RS08895
Position (kb)
1779
1780 Strain fitness (log2 ratio)
-1
0
1
2 at 1778.406 kb on + strand at 1778.407 kb on - strand at 1778.408 kb on + strand at 1778.408 kb on + strand at 1778.409 kb on - strand at 1778.409 kb on - strand at 1779.280 kb on + strand at 1779.280 kb on + strand at 1779.280 kb on + strand at 1779.280 kb on + strand at 1779.280 kb on + strand at 1779.402 kb on + strand at 1779.402 kb on + strand at 1779.403 kb on - strand at 1779.403 kb on - strand at 1779.500 kb on - strand, within A4249_RS08885 at 1779.541 kb on + strand, within A4249_RS08885 at 1779.556 kb on + strand, within A4249_RS08885 at 1779.556 kb on + strand, within A4249_RS08885 at 1779.604 kb on + strand at 1779.604 kb on + strand at 1779.604 kb on + strand at 1779.604 kb on + strand at 1779.604 kb on + strand at 1779.605 kb on - strand at 1779.634 kb on + strand at 1779.634 kb on + strand at 1779.634 kb on + strand at 1779.634 kb on + strand at 1779.635 kb on - strand at 1779.635 kb on - strand at 1779.635 kb on - strand at 1780.321 kb on - strand at 1780.321 kb on - strand at 1780.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 1,778,406 + -1.2 1,778,407 - +0.2 1,778,408 + +1.9 1,778,408 + +0.4 1,778,409 - +0.7 1,778,409 - +0.7 1,779,280 + -1.0 1,779,280 + +0.2 1,779,280 + -0.2 1,779,280 + -0.1 1,779,280 + -0.2 1,779,402 + -1.6 1,779,402 + -0.8 1,779,403 - +0.8 1,779,403 - -0.3 1,779,500 - A4249_RS08885 0.57 -0.6 1,779,541 + A4249_RS08885 0.80 +0.5 1,779,556 + A4249_RS08885 0.89 -0.3 1,779,556 + A4249_RS08885 0.89 +0.3 1,779,604 + -0.7 1,779,604 + -0.0 1,779,604 + +0.2 1,779,604 + +0.1 1,779,604 + +1.5 1,779,605 - -0.4 1,779,634 + -0.2 1,779,634 + -0.1 1,779,634 + +0.4 1,779,634 + +0.1 1,779,635 - -0.5 1,779,635 - +0.3 1,779,635 - -1.3 1,780,321 - -0.1 1,780,321 - +0.1 1,780,321 - +0.1
Or see this region's nucleotide sequence