Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01755 and A4249_RS01760 overlap by 1 nucleotides A4249_RS01760 and A4249_RS01765 overlap by 4 nucleotides A4249_RS01765 and A4249_RS01770 are separated by 134 nucleotides A4249_RS01770 and A4249_RS01775 are separated by 80 nucleotides A4249_RS01775 and A4249_RS01780 are separated by 197 nucleotides
A4249_RS01755: A4249_RS01755 - recombinase family protein, at 335,401 to 336,987
_RS01755
A4249_RS01760: A4249_RS01760 - DUF2924 domain-containing protein, at 336,987 to 337,376
_RS01760
A4249_RS01765: A4249_RS01765 - DUF3489 domain-containing protein, at 337,373 to 337,813
_RS01765
A4249_RS01770: A4249_RS01770 - hypothetical protein, at 337,948 to 338,130
_RS01770
A4249_RS01775: A4249_RS01775 - helix-turn-helix transcriptional regulator, at 338,211 to 338,417
_RS01775
A4249_RS01780: A4249_RS01780 - hypothetical protein, at 338,615 to 339,415
_RS01780
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 336.960 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.962 kb on + strand at 336.963 kb on - strand at 336.963 kb on - strand at 336.963 kb on - strand at 336.963 kb on - strand at 336.963 kb on - strand at 336.963 kb on - strand at 336.963 kb on - strand at 337.090 kb on + strand, within A4249_RS01760 at 337.091 kb on - strand, within A4249_RS01760 at 337.091 kb on - strand, within A4249_RS01760 at 337.091 kb on - strand, within A4249_RS01760 at 337.203 kb on + strand, within A4249_RS01760 at 337.203 kb on + strand, within A4249_RS01760 at 337.203 kb on + strand, within A4249_RS01760 at 337.203 kb on + strand, within A4249_RS01760 at 337.203 kb on + strand, within A4249_RS01760 at 337.392 kb on + strand at 337.437 kb on + strand, within A4249_RS01765 at 337.437 kb on + strand, within A4249_RS01765 at 337.437 kb on + strand, within A4249_RS01765 at 337.564 kb on + strand, within A4249_RS01765 at 337.685 kb on + strand, within A4249_RS01765 at 337.685 kb on + strand, within A4249_RS01765 at 337.686 kb on - strand, within A4249_RS01765 at 337.686 kb on - strand, within A4249_RS01765 at 337.686 kb on - strand, within A4249_RS01765 at 337.802 kb on + strand at 337.802 kb on + strand at 337.802 kb on + strand at 337.802 kb on + strand at 337.802 kb on + strand at 337.802 kb on + strand at 337.803 kb on - strand at 337.803 kb on - strand at 337.803 kb on - strand at 337.803 kb on - strand at 337.803 kb on - strand at 337.803 kb on - strand at 337.949 kb on + strand at 337.949 kb on + strand at 337.968 kb on + strand, within A4249_RS01770 at 337.968 kb on + strand, within A4249_RS01770 at 337.968 kb on + strand, within A4249_RS01770 at 337.969 kb on - strand, within A4249_RS01770 at 337.969 kb on - strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.086 kb on + strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.087 kb on - strand, within A4249_RS01770 at 338.150 kb on + strand at 338.150 kb on + strand at 338.150 kb on + strand at 338.150 kb on + strand at 338.150 kb on + strand at 338.150 kb on + strand at 338.150 kb on + strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.151 kb on - strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.199 kb on + strand at 338.200 kb on - strand at 338.200 kb on - strand at 338.200 kb on - strand at 338.200 kb on - strand at 338.212 kb on + strand at 338.212 kb on + strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.213 kb on - strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.453 kb on + strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.460 kb on + strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.461 kb on - strand at 338.524 kb on + strand at 338.524 kb on + strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.525 kb on - strand at 338.827 kb on - strand, within A4249_RS01780 at 338.928 kb on + strand, within A4249_RS01780 at 338.929 kb on - strand, within A4249_RS01780 at 338.929 kb on - strand, within A4249_RS01780 at 338.929 kb on - strand, within A4249_RS01780 at 338.929 kb on - strand, within A4249_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 336,960 + -0.7 336,962 + +0.9 336,962 + -0.7 336,962 + -0.3 336,962 + -0.1 336,962 + +0.4 336,962 + +1.0 336,962 + +0.2 336,963 - -0.2 336,963 - +0.6 336,963 - -0.2 336,963 - -0.1 336,963 - +1.1 336,963 - -0.7 336,963 - +0.6 337,090 + A4249_RS01760 0.26 -0.3 337,091 - A4249_RS01760 0.27 -0.3 337,091 - A4249_RS01760 0.27 -2.2 337,091 - A4249_RS01760 0.27 -1.1 337,203 + A4249_RS01760 0.55 -0.1 337,203 + A4249_RS01760 0.55 +0.7 337,203 + A4249_RS01760 0.55 +0.2 337,203 + A4249_RS01760 0.55 -0.3 337,203 + A4249_RS01760 0.55 -1.0 337,392 + -1.2 337,437 + A4249_RS01765 0.15 +0.1 337,437 + A4249_RS01765 0.15 +0.5 337,437 + A4249_RS01765 0.15 +0.2 337,564 + A4249_RS01765 0.43 -0.1 337,685 + A4249_RS01765 0.71 -0.3 337,685 + A4249_RS01765 0.71 -0.5 337,686 - A4249_RS01765 0.71 -1.0 337,686 - A4249_RS01765 0.71 +0.4 337,686 - A4249_RS01765 0.71 -0.7 337,802 + -0.6 337,802 + -0.7 337,802 + -0.6 337,802 + +0.1 337,802 + -0.6 337,802 + +0.6 337,803 - -1.4 337,803 - +0.1 337,803 - -0.5 337,803 - +1.6 337,803 - +0.7 337,803 - -0.8 337,949 + -0.3 337,949 + -0.2 337,968 + A4249_RS01770 0.11 -1.5 337,968 + A4249_RS01770 0.11 -0.9 337,968 + A4249_RS01770 0.11 +0.4 337,969 - A4249_RS01770 0.11 -0.2 337,969 - A4249_RS01770 0.11 +0.4 338,086 + A4249_RS01770 0.75 -0.1 338,086 + A4249_RS01770 0.75 -0.9 338,086 + A4249_RS01770 0.75 -0.4 338,086 + A4249_RS01770 0.75 -0.2 338,086 + A4249_RS01770 0.75 -0.4 338,086 + A4249_RS01770 0.75 -0.1 338,086 + A4249_RS01770 0.75 -0.4 338,086 + A4249_RS01770 0.75 +1.6 338,086 + A4249_RS01770 0.75 -0.4 338,087 - A4249_RS01770 0.76 -1.0 338,087 - A4249_RS01770 0.76 -0.6 338,087 - A4249_RS01770 0.76 -0.5 338,087 - A4249_RS01770 0.76 -0.3 338,087 - A4249_RS01770 0.76 -0.9 338,087 - A4249_RS01770 0.76 -0.5 338,087 - A4249_RS01770 0.76 -0.7 338,150 + -1.8 338,150 + -0.5 338,150 + -0.6 338,150 + -0.6 338,150 + -0.3 338,150 + +1.0 338,150 + -0.2 338,151 - -0.5 338,151 - +1.0 338,151 - +0.4 338,151 - -1.1 338,151 - -0.4 338,151 - -0.2 338,151 - +1.1 338,199 + +0.3 338,199 + +0.3 338,199 + -0.1 338,199 + -0.4 338,199 + -0.8 338,199 + -0.3 338,199 + -0.4 338,200 - +0.1 338,200 - -0.6 338,200 - -0.6 338,200 - -0.3 338,212 + +0.2 338,212 + -0.2 338,213 - -0.0 338,213 - -0.2 338,213 - -1.4 338,453 + +0.4 338,453 + -0.0 338,453 + -0.7 338,453 + -0.5 338,453 + +0.0 338,453 + -2.3 338,454 - +0.4 338,454 - -1.8 338,454 - +0.3 338,454 - -1.7 338,460 + +0.6 338,460 + +0.8 338,460 + +0.2 338,460 + +0.3 338,460 + -0.6 338,460 + -0.0 338,460 + -0.4 338,460 + +0.7 338,460 + -0.2 338,461 - +0.8 338,461 - +0.0 338,461 - +1.1 338,461 - +1.1 338,461 - +0.8 338,461 - +0.7 338,461 - +0.4 338,461 - -0.6 338,461 - -0.2 338,524 + -0.0 338,524 + +0.4 338,525 - -0.4 338,525 - -0.5 338,525 - -0.6 338,525 - -0.8 338,525 - -0.8 338,525 - -1.7 338,525 - -0.3 338,525 - -1.3 338,827 - A4249_RS01780 0.26 +0.4 338,928 + A4249_RS01780 0.39 +0.4 338,929 - A4249_RS01780 0.39 +1.1 338,929 - A4249_RS01780 0.39 +0.4 338,929 - A4249_RS01780 0.39 +1.2 338,929 - A4249_RS01780 0.39 +1.7
Or see this region's nucleotide sequence