Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01320 and A4249_RS01325 overlap by 4 nucleotides A4249_RS01325 and A4249_RS01330 overlap by 4 nucleotides A4249_RS01330 and A4249_RS01335 overlap by 11 nucleotides A4249_RS01335 and A4249_RS01340 overlap by 4 nucleotides A4249_RS01340 and A4249_RS01345 overlap by 4 nucleotides A4249_RS01345 and A4249_RS01350 are separated by 13 nucleotides A4249_RS01350 and A4249_RS01355 are separated by 166 nucleotides
A4249_RS01320: A4249_RS01320 - hypothetical protein, at 252,410 to 253,387
_RS01320
A4249_RS01325: A4249_RS01325 - hypothetical protein, at 253,384 to 253,725
_RS01325
A4249_RS01330: A4249_RS01330 - hypothetical protein, at 253,722 to 253,952
_RS01330
A4249_RS01335: A4249_RS01335 - hypothetical protein, at 253,942 to 254,337
_RS01335
A4249_RS01340: A4249_RS01340 - phosphoadenosine phosphosulfate reductase family protein, at 254,334 to 255,479
_RS01340
A4249_RS01345: A4249_RS01345 - helix-turn-helix domain-containing protein, at 255,476 to 255,892
_RS01345
A4249_RS01350: A4249_RS01350 - hypothetical protein, at 255,906 to 256,256
_RS01350
A4249_RS01355: A4249_RS01355 - hypothetical protein, at 256,423 to 257,073
_RS01355
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 253.500 kb on + strand, within A4249_RS01325 at 253.500 kb on + strand, within A4249_RS01325 at 253.501 kb on - strand, within A4249_RS01325 at 253.501 kb on - strand, within A4249_RS01325 at 253.719 kb on + strand at 253.719 kb on + strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 254.612 kb on + strand, within A4249_RS01340 at 254.737 kb on + strand, within A4249_RS01340 at 254.839 kb on + strand, within A4249_RS01340 at 254.839 kb on + strand, within A4249_RS01340 at 254.839 kb on + strand, within A4249_RS01340 at 254.839 kb on + strand, within A4249_RS01340 at 255.107 kb on + strand, within A4249_RS01340 at 255.107 kb on + strand, within A4249_RS01340 at 255.107 kb on + strand, within A4249_RS01340 at 255.107 kb on + strand, within A4249_RS01340 at 255.107 kb on + strand, within A4249_RS01340 at 255.154 kb on + strand, within A4249_RS01340 at 255.154 kb on + strand, within A4249_RS01340 at 255.154 kb on + strand, within A4249_RS01340 at 255.561 kb on + strand, within A4249_RS01345 at 256.335 kb on + strand at 256.335 kb on + strand at 256.335 kb on + strand at 256.335 kb on + strand at 256.335 kb on + strand at 256.335 kb on + strand at 256.410 kb on + strand at 256.410 kb on + strand at 256.410 kb on + strand at 256.410 kb on + strand at 256.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 253,500 + A4249_RS01325 0.34 +0.1 253,500 + A4249_RS01325 0.34 +1.0 253,501 - A4249_RS01325 0.34 -1.4 253,501 - A4249_RS01325 0.34 -1.9 253,719 + -1.9 253,719 + +1.3 253,720 - -0.2 253,720 - -1.0 253,720 - +0.1 253,720 - +1.1 253,720 - -0.7 253,720 - -0.3 253,720 - +0.0 253,720 - +0.6 253,720 - +0.4 253,720 - +0.7 253,720 - +0.6 254,612 + A4249_RS01340 0.24 -0.0 254,737 + A4249_RS01340 0.35 -0.0 254,839 + A4249_RS01340 0.44 +0.0 254,839 + A4249_RS01340 0.44 +0.2 254,839 + A4249_RS01340 0.44 -1.4 254,839 + A4249_RS01340 0.44 -1.3 255,107 + A4249_RS01340 0.67 +0.0 255,107 + A4249_RS01340 0.67 -1.2 255,107 + A4249_RS01340 0.67 -0.4 255,107 + A4249_RS01340 0.67 -0.7 255,107 + A4249_RS01340 0.67 -0.1 255,154 + A4249_RS01340 0.72 -0.9 255,154 + A4249_RS01340 0.72 -0.5 255,154 + A4249_RS01340 0.72 -0.0 255,561 + A4249_RS01345 0.20 -1.6 256,335 + +0.4 256,335 + -0.5 256,335 + -0.6 256,335 + -0.6 256,335 + -1.7 256,335 + -0.1 256,410 + -0.3 256,410 + -0.7 256,410 + +0.4 256,410 + +0.5 256,410 + -0.5
Or see this region's nucleotide sequence