Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18930 and HMPREF1058_RS18925 are separated by 4 nucleotides HMPREF1058_RS18925 and HMPREF1058_RS18920 overlap by 16 nucleotides HMPREF1058_RS18920 and HMPREF1058_RS18915 are separated by 23 nucleotides
HMPREF1058_RS18935: HMPREF1058_RS18935 - hypothetical protein, at 45,034 to 45,615
_RS18935
HMPREF1058_RS18930: HMPREF1058_RS18930 - hypothetical protein, at 45,590 to 46,603
_RS18930
HMPREF1058_RS18925: HMPREF1058_RS18925 - DEAD/DEAH box helicase, at 46,608 to 47,780
_RS18925
HMPREF1058_RS18920: HMPREF1058_RS18920 - hypothetical protein, at 47,765 to 48,406
_RS18920
HMPREF1058_RS18915: HMPREF1058_RS18915 - recombination protein NinG, at 48,430 to 48,909
_RS18915
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.952 kb on + strand, within HMPREF1058_RS18930 at 45.957 kb on + strand, within HMPREF1058_RS18930 at 45.960 kb on + strand, within HMPREF1058_RS18930 at 45.978 kb on + strand, within HMPREF1058_RS18930 at 46.067 kb on + strand, within HMPREF1058_RS18930 at 46.067 kb on + strand, within HMPREF1058_RS18930 at 46.069 kb on + strand, within HMPREF1058_RS18930 at 46.070 kb on - strand, within HMPREF1058_RS18930 at 46.298 kb on + strand, within HMPREF1058_RS18930 at 46.298 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.336 kb on + strand, within HMPREF1058_RS18930 at 46.537 kb on + strand at 46.538 kb on - strand at 46.658 kb on + strand at 46.748 kb on + strand, within HMPREF1058_RS18925 at 46.829 kb on + strand, within HMPREF1058_RS18925 at 46.863 kb on + strand, within HMPREF1058_RS18925 at 46.878 kb on + strand, within HMPREF1058_RS18925 at 46.934 kb on + strand, within HMPREF1058_RS18925 at 47.021 kb on + strand, within HMPREF1058_RS18925 at 47.222 kb on + strand, within HMPREF1058_RS18925 at 47.222 kb on + strand, within HMPREF1058_RS18925 at 47.244 kb on + strand, within HMPREF1058_RS18925 at 47.244 kb on + strand, within HMPREF1058_RS18925 at 47.335 kb on + strand, within HMPREF1058_RS18925 at 47.540 kb on + strand, within HMPREF1058_RS18925 at 47.540 kb on + strand, within HMPREF1058_RS18925 at 47.644 kb on - strand, within HMPREF1058_RS18925 at 47.645 kb on + strand, within HMPREF1058_RS18925 at 47.678 kb on + strand at 47.857 kb on + strand, within HMPREF1058_RS18920 at 47.857 kb on + strand, within HMPREF1058_RS18920 at 47.857 kb on + strand, within HMPREF1058_RS18920 at 47.857 kb on + strand, within HMPREF1058_RS18920 at 47.908 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.912 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.914 kb on + strand, within HMPREF1058_RS18920 at 47.926 kb on + strand, within HMPREF1058_RS18920 at 47.993 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.088 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.325 kb on + strand, within HMPREF1058_RS18920 at 48.365 kb on + strand at 48.412 kb on + strand at 48.519 kb on + strand, within HMPREF1058_RS18915 at 48.675 kb on + strand, within HMPREF1058_RS18915 at 48.686 kb on + strand, within HMPREF1058_RS18915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 45,952 + HMPREF1058_RS18930 0.36 +1.6 45,957 + HMPREF1058_RS18930 0.36 +1.0 45,960 + HMPREF1058_RS18930 0.36 -0.1 45,978 + HMPREF1058_RS18930 0.38 +0.3 46,067 + HMPREF1058_RS18930 0.47 -0.9 46,067 + HMPREF1058_RS18930 0.47 -1.1 46,069 + HMPREF1058_RS18930 0.47 +0.6 46,070 - HMPREF1058_RS18930 0.47 +2.7 46,298 + HMPREF1058_RS18930 0.70 -1.5 46,298 + HMPREF1058_RS18930 0.70 +1.0 46,336 + HMPREF1058_RS18930 0.74 +0.1 46,336 + HMPREF1058_RS18930 0.74 +0.5 46,336 + HMPREF1058_RS18930 0.74 +0.6 46,336 + HMPREF1058_RS18930 0.74 +0.8 46,537 + -0.2 46,538 - +0.5 46,658 + -2.3 46,748 + HMPREF1058_RS18925 0.12 +0.0 46,829 + HMPREF1058_RS18925 0.19 +0.7 46,863 + HMPREF1058_RS18925 0.22 +0.8 46,878 + HMPREF1058_RS18925 0.23 -3.7 46,934 + HMPREF1058_RS18925 0.28 +0.4 47,021 + HMPREF1058_RS18925 0.35 -0.0 47,222 + HMPREF1058_RS18925 0.52 -0.1 47,222 + HMPREF1058_RS18925 0.52 +1.2 47,244 + HMPREF1058_RS18925 0.54 +0.3 47,244 + HMPREF1058_RS18925 0.54 -0.6 47,335 + HMPREF1058_RS18925 0.62 +0.7 47,540 + HMPREF1058_RS18925 0.79 -0.2 47,540 + HMPREF1058_RS18925 0.79 -0.1 47,644 - HMPREF1058_RS18925 0.88 -2.7 47,645 + HMPREF1058_RS18925 0.88 +0.3 47,678 + -1.0 47,857 + HMPREF1058_RS18920 0.14 -0.1 47,857 + HMPREF1058_RS18920 0.14 -0.1 47,857 + HMPREF1058_RS18920 0.14 +0.0 47,857 + HMPREF1058_RS18920 0.14 -0.2 47,908 + HMPREF1058_RS18920 0.22 -0.6 47,912 + HMPREF1058_RS18920 0.23 -0.9 47,912 + HMPREF1058_RS18920 0.23 +0.0 47,914 + HMPREF1058_RS18920 0.23 +0.5 47,914 + HMPREF1058_RS18920 0.23 -1.8 47,914 + HMPREF1058_RS18920 0.23 -0.3 47,926 + HMPREF1058_RS18920 0.25 -1.8 47,993 + HMPREF1058_RS18920 0.36 +1.5 48,088 + HMPREF1058_RS18920 0.50 +0.1 48,088 + HMPREF1058_RS18920 0.50 +1.4 48,325 + HMPREF1058_RS18920 0.87 -1.0 48,325 + HMPREF1058_RS18920 0.87 -1.8 48,325 + HMPREF1058_RS18920 0.87 +0.0 48,365 + +2.0 48,412 + +1.5 48,519 + HMPREF1058_RS18915 0.19 -1.1 48,675 + HMPREF1058_RS18915 0.51 +1.0 48,686 + HMPREF1058_RS18915 0.53 -0.2
Or see this region's nucleotide sequence