Strain Fitness in Erwinia amylovora T8 around OLJFJH_10650

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10645 and OLJFJH_10650 are separated by 147 nucleotidesOLJFJH_10650 and OLJFJH_10655 are separated by 114 nucleotides OLJFJH_10645: OLJFJH_10645 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,203,870 to 2,204,583 _10645 OLJFJH_10650: OLJFJH_10650 - Putative neutral zinc metallopeptidase, at 2,204,731 to 2,205,594 _10650 OLJFJH_10655: OLJFJH_10655 - tRNA cytosine(34) acetyltransferase TmcA, at 2,205,709 to 2,207,604 _10655 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2203.756 kb on + strandat 2203.756 kb on + strandat 2203.756 kb on + strandat 2203.757 kb on - strandat 2203.757 kb on - strandat 2203.757 kb on - strandat 2203.758 kb on + strandat 2203.758 kb on + strandat 2203.759 kb on - strandat 2203.759 kb on - strandat 2203.759 kb on - strandat 2203.773 kb on + strandat 2203.774 kb on - strandat 2203.864 kb on - strandat 2203.915 kb on + strandat 2204.144 kb on + strand, within OLJFJH_10645at 2204.144 kb on + strand, within OLJFJH_10645at 2204.147 kb on + strand, within OLJFJH_10645at 2204.148 kb on - strand, within OLJFJH_10645at 2204.148 kb on - strand, within OLJFJH_10645at 2204.148 kb on - strand, within OLJFJH_10645at 2204.148 kb on - strand, within OLJFJH_10645at 2204.151 kb on + strand, within OLJFJH_10645at 2204.248 kb on - strand, within OLJFJH_10645at 2204.543 kb on - strandat 2204.543 kb on - strandat 2204.636 kb on + strandat 2204.685 kb on + strandat 2204.695 kb on + strandat 2204.695 kb on + strandat 2204.700 kb on + strandat 2204.730 kb on + strandat 2204.730 kb on + strandat 2204.731 kb on - strandat 2204.731 kb on - strandat 2204.810 kb on + strandat 2204.814 kb on + strandat 2204.814 kb on + strandat 2204.815 kb on - strandat 2204.815 kb on - strandat 2204.815 kb on - strandat 2204.894 kb on + strand, within OLJFJH_10650at 2204.894 kb on + strand, within OLJFJH_10650at 2205.012 kb on + strand, within OLJFJH_10650at 2205.013 kb on - strand, within OLJFJH_10650at 2205.073 kb on + strand, within OLJFJH_10650at 2205.074 kb on - strand, within OLJFJH_10650at 2205.074 kb on - strand, within OLJFJH_10650at 2205.074 kb on - strand, within OLJFJH_10650at 2205.074 kb on - strand, within OLJFJH_10650at 2205.130 kb on + strand, within OLJFJH_10650at 2205.131 kb on - strand, within OLJFJH_10650at 2205.154 kb on + strand, within OLJFJH_10650at 2205.155 kb on - strand, within OLJFJH_10650at 2205.224 kb on - strand, within OLJFJH_10650at 2205.224 kb on - strand, within OLJFJH_10650at 2205.382 kb on + strand, within OLJFJH_10650at 2205.382 kb on + strand, within OLJFJH_10650at 2205.382 kb on + strand, within OLJFJH_10650at 2205.382 kb on + strand, within OLJFJH_10650at 2205.382 kb on + strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.383 kb on - strand, within OLJFJH_10650at 2205.384 kb on + strand, within OLJFJH_10650at 2205.384 kb on + strand, within OLJFJH_10650at 2205.384 kb on + strand, within OLJFJH_10650at 2205.385 kb on - strand, within OLJFJH_10650at 2205.385 kb on - strand, within OLJFJH_10650at 2205.385 kb on - strand, within OLJFJH_10650at 2205.385 kb on - strand, within OLJFJH_10650at 2205.432 kb on + strand, within OLJFJH_10650at 2205.531 kb on + strandat 2205.532 kb on - strandat 2205.532 kb on - strandat 2205.532 kb on - strandat 2205.532 kb on - strandat 2205.532 kb on - strandat 2205.580 kb on - strandat 2205.593 kb on - strandat 2205.612 kb on - strandat 2205.789 kb on + strandat 2205.789 kb on + strandat 2205.789 kb on + strandat 2205.790 kb on - strandat 2205.899 kb on + strand, within OLJFJH_10655at 2205.954 kb on - strand, within OLJFJH_10655at 2206.130 kb on + strand, within OLJFJH_10655at 2206.165 kb on + strand, within OLJFJH_10655at 2206.165 kb on + strand, within OLJFJH_10655at 2206.165 kb on + strand, within OLJFJH_10655at 2206.166 kb on - strand, within OLJFJH_10655at 2206.166 kb on - strand, within OLJFJH_10655at 2206.359 kb on + strand, within OLJFJH_10655at 2206.409 kb on + strand, within OLJFJH_10655at 2206.410 kb on - strand, within OLJFJH_10655at 2206.435 kb on + strand, within OLJFJH_10655at 2206.436 kb on - strand, within OLJFJH_10655at 2206.436 kb on - strand, within OLJFJH_10655at 2206.436 kb on - strand, within OLJFJH_10655at 2206.582 kb on - strand, within OLJFJH_10655

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-4
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2,203,756 + +0.1
2,203,756 + +0.0
2,203,756 + +0.3
2,203,757 - +1.4
2,203,757 - +0.6
2,203,757 - -0.4
2,203,758 + +0.8
2,203,758 + +0.4
2,203,759 - -2.8
2,203,759 - -2.5
2,203,759 - -1.9
2,203,773 + +0.2
2,203,774 - -3.0
2,203,864 - -0.5
2,203,915 + -2.4
2,204,144 + OLJFJH_10645 0.38 -3.3
2,204,144 + OLJFJH_10645 0.38 -3.4
2,204,147 + OLJFJH_10645 0.39 -2.4
2,204,148 - OLJFJH_10645 0.39 -0.4
2,204,148 - OLJFJH_10645 0.39 -3.2
2,204,148 - OLJFJH_10645 0.39 -2.0
2,204,148 - OLJFJH_10645 0.39 -2.9
2,204,151 + OLJFJH_10645 0.39 -1.7
2,204,248 - OLJFJH_10645 0.53 -1.8
2,204,543 - -2.6
2,204,543 - -3.6
2,204,636 + -0.3
2,204,685 + +0.4
2,204,695 + -0.3
2,204,695 + +1.3
2,204,700 + -0.6
2,204,730 + +1.2
2,204,730 + +0.7
2,204,731 - -2.3
2,204,731 - +0.4
2,204,810 + +0.8
2,204,814 + -0.1
2,204,814 + -0.6
2,204,815 - -0.7
2,204,815 - +1.0
2,204,815 - +0.9
2,204,894 + OLJFJH_10650 0.19 +0.2
2,204,894 + OLJFJH_10650 0.19 +1.1
2,205,012 + OLJFJH_10650 0.33 +0.4
2,205,013 - OLJFJH_10650 0.33 +1.2
2,205,073 + OLJFJH_10650 0.40 -0.1
2,205,074 - OLJFJH_10650 0.40 -1.1
2,205,074 - OLJFJH_10650 0.40 -0.7
2,205,074 - OLJFJH_10650 0.40 -0.3
2,205,074 - OLJFJH_10650 0.40 -1.1
2,205,130 + OLJFJH_10650 0.46 -0.1
2,205,131 - OLJFJH_10650 0.46 -1.3
2,205,154 + OLJFJH_10650 0.49 +0.3
2,205,155 - OLJFJH_10650 0.49 -1.0
2,205,224 - OLJFJH_10650 0.57 -0.8
2,205,224 - OLJFJH_10650 0.57 +0.4
2,205,382 + OLJFJH_10650 0.75 +2.3
2,205,382 + OLJFJH_10650 0.75 -0.7
2,205,382 + OLJFJH_10650 0.75 -0.3
2,205,382 + OLJFJH_10650 0.75 -1.2
2,205,382 + OLJFJH_10650 0.75 -0.3
2,205,383 - OLJFJH_10650 0.75 +1.3
2,205,383 - OLJFJH_10650 0.75 +0.6
2,205,383 - OLJFJH_10650 0.75 +0.1
2,205,383 - OLJFJH_10650 0.75 -0.8
2,205,383 - OLJFJH_10650 0.75 -0.8
2,205,383 - OLJFJH_10650 0.75 -1.1
2,205,383 - OLJFJH_10650 0.75 -0.6
2,205,384 + OLJFJH_10650 0.76 +0.7
2,205,384 + OLJFJH_10650 0.76 -1.2
2,205,384 + OLJFJH_10650 0.76 -0.5
2,205,385 - OLJFJH_10650 0.76 +0.4
2,205,385 - OLJFJH_10650 0.76 +0.8
2,205,385 - OLJFJH_10650 0.76 -0.2
2,205,385 - OLJFJH_10650 0.76 -1.6
2,205,432 + OLJFJH_10650 0.81 -1.4
2,205,531 + -0.8
2,205,532 - -0.1
2,205,532 - +0.1
2,205,532 - -0.2
2,205,532 - -0.0
2,205,532 - +0.6
2,205,580 - -0.5
2,205,593 - +2.7
2,205,612 - -1.4
2,205,789 + -0.4
2,205,789 + -0.2
2,205,789 + +1.2
2,205,790 - +0.8
2,205,899 + OLJFJH_10655 0.10 -2.0
2,205,954 - OLJFJH_10655 0.13 -1.2
2,206,130 + OLJFJH_10655 0.22 +5.0
2,206,165 + OLJFJH_10655 0.24 -0.2
2,206,165 + OLJFJH_10655 0.24 -0.4
2,206,165 + OLJFJH_10655 0.24 +1.7
2,206,166 - OLJFJH_10655 0.24 -0.1
2,206,166 - OLJFJH_10655 0.24 +1.9
2,206,359 + OLJFJH_10655 0.34 +0.1
2,206,409 + OLJFJH_10655 0.37 +2.9
2,206,410 - OLJFJH_10655 0.37 +1.0
2,206,435 + OLJFJH_10655 0.38 -0.5
2,206,436 - OLJFJH_10655 0.38 +0.7
2,206,436 - OLJFJH_10655 0.38 -1.6
2,206,436 - OLJFJH_10655 0.38 -2.0
2,206,582 - OLJFJH_10655 0.46 +0.7

Or see this region's nucleotide sequence