Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4257 and GFF4258 overlap by 8 nucleotides GFF4258 and GFF4259 are separated by 34 nucleotides GFF4259 and GFF4260 are separated by 154 nucleotides
GFF4257 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 172,605 to 173,741
GFF4257
GFF4258 - no description, at 173,734 to 174,105
GFF4258
GFF4259 - Transcriptional regulator, DeoR family, at 174,140 to 174,862
GFF4259
GFF4260 - hypothetical protein, at 175,017 to 179,039
GFF4260
Position (kb) 174
175 Strain fitness (log2 ratio) -1
0
1
2 at 173.310 kb on + strand, within GFF4257 at 173.310 kb on + strand, within GFF4257 at 173.311 kb on - strand, within GFF4257 at 173.319 kb on + strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.453 kb on - strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.491 kb on - strand, within GFF4257 at 173.739 kb on + strand at 173.739 kb on + strand at 173.740 kb on - strand at 173.740 kb on - strand at 173.861 kb on + strand, within GFF4258 at 173.861 kb on + strand, within GFF4258 at 174.047 kb on + strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.170 kb on + strand at 174.170 kb on + strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.400 kb on - strand, within GFF4259 at 174.687 kb on + strand, within GFF4259 at 174.688 kb on - strand, within GFF4259 at 174.874 kb on + strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.875 kb on - strand at 174.950 kb on + strand at 174.950 kb on + strand at 174.950 kb on + strand at 174.950 kb on + strand at 174.950 kb on + strand at 174.950 kb on + strand at 174.951 kb on - strand at 174.951 kb on - strand at 174.951 kb on - strand at 174.951 kb on - strand at 174.951 kb on - strand at 174.954 kb on - strand at 174.954 kb on - strand at 174.967 kb on - strand at 174.981 kb on + strand at 174.981 kb on + strand at 174.982 kb on - strand at 175.000 kb on + strand at 175.000 kb on + strand at 175.000 kb on + strand at 175.000 kb on + strand at 175.000 kb on + strand at 175.001 kb on - strand at 175.001 kb on - strand at 175.001 kb on - strand at 175.029 kb on + strand at 175.029 kb on + strand at 175.488 kb on + strand, within GFF4260 at 175.488 kb on + strand, within GFF4260 at 175.488 kb on + strand, within GFF4260 at 175.489 kb on - strand, within GFF4260 at 175.689 kb on + strand, within GFF4260 at 175.689 kb on + strand, within GFF4260 at 175.690 kb on - strand, within GFF4260
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 173,310 + GFF4257 0.62 -0.4 173,310 + GFF4257 0.62 -0.9 173,311 - GFF4257 0.62 -0.1 173,319 + GFF4257 0.63 -0.4 173,320 - GFF4257 0.63 +0.9 173,320 - GFF4257 0.63 -0.1 173,453 - GFF4257 0.75 -0.0 173,490 + GFF4257 0.78 +0.2 173,490 + GFF4257 0.78 -0.2 173,491 - GFF4257 0.78 -0.6 173,739 + +2.1 173,739 + -0.6 173,740 - -0.1 173,740 - -0.7 173,861 + GFF4258 0.34 +0.3 173,861 + GFF4258 0.34 -0.3 174,047 + GFF4258 0.84 -0.2 174,048 - GFF4258 0.84 +0.8 174,048 - GFF4258 0.84 -0.2 174,048 - GFF4258 0.84 +0.3 174,141 + +0.8 174,141 + -0.6 174,141 + -0.6 174,141 + -0.8 174,141 + +0.3 174,141 + -1.4 174,141 + +0.5 174,141 + +0.3 174,141 + +0.6 174,142 - -0.5 174,142 - -0.4 174,142 - -1.4 174,170 + -0.0 174,170 + -0.4 174,171 - +0.8 174,171 - -0.5 174,171 - +0.6 174,400 - GFF4259 0.36 -0.1 174,687 + GFF4259 0.76 +0.1 174,688 - GFF4259 0.76 +0.5 174,874 + -0.2 174,875 - -0.4 174,875 - -0.8 174,875 - +0.0 174,875 - -0.2 174,875 - +0.5 174,875 - -0.1 174,875 - +1.4 174,950 + -0.5 174,950 + -1.3 174,950 + +0.0 174,950 + -0.1 174,950 + -0.5 174,950 + -0.5 174,951 - +0.9 174,951 - +0.4 174,951 - -1.0 174,951 - +0.1 174,951 - +0.6 174,954 - -0.3 174,954 - +0.5 174,967 - -0.7 174,981 + -0.2 174,981 + +0.4 174,982 - +1.1 175,000 + -0.2 175,000 + -0.2 175,000 + -1.3 175,000 + -0.2 175,000 + +0.3 175,001 - -0.8 175,001 - -0.5 175,001 - -0.7 175,029 + +0.1 175,029 + +1.3 175,488 + GFF4260 0.12 -0.3 175,488 + GFF4260 0.12 +0.3 175,488 + GFF4260 0.12 -0.2 175,489 - GFF4260 0.12 -0.1 175,689 + GFF4260 0.17 -0.7 175,689 + GFF4260 0.17 +0.6 175,690 - GFF4260 0.17 +1.1
Or see this region's nucleotide sequence