Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11265 and HMPREF1078_RS11270 are separated by 14 nucleotides HMPREF1078_RS11270 and HMPREF1078_RS11275 are separated by 17 nucleotides HMPREF1078_RS11275 and HMPREF1078_RS11280 are separated by 87 nucleotides
HMPREF1078_RS11265: HMPREF1078_RS11265 - outer membrane protein assembly factor BamA, at 173,698 to 176,385
_RS11265
HMPREF1078_RS11270: HMPREF1078_RS11270 - isoprenyl transferase, at 176,400 to 177,143
_RS11270
HMPREF1078_RS11275: HMPREF1078_RS11275 - DUF6089 family protein, at 177,161 to 177,880
_RS11275
HMPREF1078_RS11280: HMPREF1078_RS11280 - DUF6242 domain-containing protein, at 177,968 to 179,395
_RS11280
Position (kb) 177
178 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 176.410 kb on - strand at 177.144 kb on - strand at 177.144 kb on - strand at 177.157 kb on - strand at 177.157 kb on - strand at 177.157 kb on - strand at 177.159 kb on - strand at 177.163 kb on - strand at 177.163 kb on - strand at 177.168 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.170 kb on - strand at 177.173 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.177 kb on - strand at 177.227 kb on - strand at 177.260 kb on - strand, within HMPREF1078_RS11275 at 177.284 kb on - strand, within HMPREF1078_RS11275 at 177.284 kb on - strand, within HMPREF1078_RS11275 at 177.289 kb on - strand, within HMPREF1078_RS11275 at 177.408 kb on - strand, within HMPREF1078_RS11275 at 177.408 kb on - strand, within HMPREF1078_RS11275 at 177.514 kb on - strand, within HMPREF1078_RS11275 at 177.763 kb on - strand, within HMPREF1078_RS11275 at 177.796 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.800 kb on - strand, within HMPREF1078_RS11275 at 177.802 kb on - strand, within HMPREF1078_RS11275 at 177.846 kb on - strand at 177.846 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.855 kb on - strand at 177.881 kb on - strand at 177.897 kb on - strand at 177.902 kb on - strand at 177.902 kb on - strand at 177.902 kb on - strand at 177.904 kb on - strand at 177.904 kb on - strand at 177.904 kb on - strand at 177.916 kb on - strand at 177.940 kb on + strand at 177.941 kb on - strand at 177.964 kb on - strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.965 kb on + strand at 177.966 kb on - strand at 177.966 kb on - strand at 177.969 kb on + strand at 177.969 kb on + strand at 177.969 kb on + strand at 177.970 kb on - strand at 177.988 kb on + strand at 178.013 kb on + strand at 178.013 kb on + strand at 178.014 kb on - strand at 178.014 kb on - strand at 178.014 kb on - strand at 178.015 kb on - strand at 178.024 kb on + strand at 178.025 kb on - strand at 178.051 kb on - strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.054 kb on + strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.055 kb on - strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.056 kb on + strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.057 kb on - strand at 178.060 kb on + strand at 178.074 kb on + strand at 178.074 kb on + strand at 178.078 kb on + strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.116 kb on - strand, within HMPREF1078_RS11280 at 178.145 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.167 kb on + strand, within HMPREF1078_RS11280 at 178.168 kb on - strand, within HMPREF1078_RS11280 at 178.168 kb on - strand, within HMPREF1078_RS11280 at 178.187 kb on - strand, within HMPREF1078_RS11280 at 178.213 kb on + strand, within HMPREF1078_RS11280 at 178.214 kb on - strand, within HMPREF1078_RS11280 at 178.223 kb on - strand, within HMPREF1078_RS11280 at 178.231 kb on - strand, within HMPREF1078_RS11280 at 178.339 kb on + strand, within HMPREF1078_RS11280 at 178.339 kb on + strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.340 kb on - strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.348 kb on + strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.349 kb on - strand, within HMPREF1078_RS11280 at 178.394 kb on - strand, within HMPREF1078_RS11280 at 178.396 kb on - strand, within HMPREF1078_RS11280 at 178.458 kb on - strand, within HMPREF1078_RS11280 at 178.474 kb on + strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.475 kb on - strand, within HMPREF1078_RS11280 at 178.476 kb on + strand, within HMPREF1078_RS11280 at 178.516 kb on + strand, within HMPREF1078_RS11280 at 178.517 kb on - strand, within HMPREF1078_RS11280 at 178.517 kb on - strand, within HMPREF1078_RS11280 at 178.534 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.565 kb on + strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.566 kb on - strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.567 kb on + strand, within HMPREF1078_RS11280 at 178.568 kb on - strand, within HMPREF1078_RS11280 at 178.568 kb on - strand, within HMPREF1078_RS11280 at 178.636 kb on + strand, within HMPREF1078_RS11280 at 178.637 kb on - strand, within HMPREF1078_RS11280 at 178.646 kb on - strand, within HMPREF1078_RS11280 at 178.665 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.680 kb on + strand, within HMPREF1078_RS11280 at 178.728 kb on - strand, within HMPREF1078_RS11280 at 178.793 kb on + strand, within HMPREF1078_RS11280 at 178.793 kb on + strand, within HMPREF1078_RS11280 at 178.800 kb on - strand, within HMPREF1078_RS11280 at 178.810 kb on + strand, within HMPREF1078_RS11280 at 178.810 kb on + strand, within HMPREF1078_RS11280 at 178.811 kb on - strand, within HMPREF1078_RS11280 at 178.811 kb on - strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.812 kb on + strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.813 kb on - strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.816 kb on + strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.817 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.819 kb on - strand, within HMPREF1078_RS11280 at 178.821 kb on + strand, within HMPREF1078_RS11280 at 178.854 kb on - strand, within HMPREF1078_RS11280
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 176,410 - +1.8 177,144 - +1.3 177,144 - -0.1 177,157 - -3.0 177,157 - +0.8 177,157 - -0.5 177,159 - +0.2 177,163 - -0.2 177,163 - -0.2 177,168 - -1.8 177,170 - -1.5 177,170 - -1.8 177,170 - -4.6 177,170 - -0.4 177,173 - -1.5 177,177 - -0.8 177,177 - -3.5 177,177 - -0.4 177,227 - -2.6 177,260 - HMPREF1078_RS11275 0.14 -3.1 177,284 - HMPREF1078_RS11275 0.17 -0.9 177,284 - HMPREF1078_RS11275 0.17 -1.6 177,289 - HMPREF1078_RS11275 0.18 -1.8 177,408 - HMPREF1078_RS11275 0.34 -0.7 177,408 - HMPREF1078_RS11275 0.34 -1.8 177,514 - HMPREF1078_RS11275 0.49 -2.2 177,763 - HMPREF1078_RS11275 0.84 -2.8 177,796 - HMPREF1078_RS11275 0.88 -2.2 177,800 - HMPREF1078_RS11275 0.89 -1.8 177,800 - HMPREF1078_RS11275 0.89 -2.0 177,800 - HMPREF1078_RS11275 0.89 -2.2 177,802 - HMPREF1078_RS11275 0.89 -1.0 177,846 - -2.4 177,846 - -1.9 177,849 - -0.4 177,849 - -1.3 177,849 - -4.5 177,849 - -2.7 177,849 - +0.6 177,849 - -0.4 177,855 - -3.0 177,881 - -2.2 177,897 - -1.5 177,902 - -0.2 177,902 - +0.1 177,902 - -1.7 177,904 - -0.9 177,904 - +0.4 177,904 - -3.1 177,916 - -1.7 177,940 + -1.0 177,941 - +0.3 177,964 - -0.3 177,965 + -3.3 177,965 + -2.4 177,965 + -3.8 177,965 + -3.2 177,966 - -0.4 177,966 - +1.7 177,969 + -3.3 177,969 + -2.1 177,969 + -3.2 177,970 - +0.6 177,988 + -3.0 178,013 + -3.3 178,013 + -4.3 178,014 - -1.8 178,014 - +1.8 178,014 - -2.1 178,015 - -2.8 178,024 + -4.3 178,025 - -3.9 178,051 - -2.7 178,054 + -3.9 178,054 + -0.9 178,054 + -4.7 178,054 + -4.4 178,054 + -3.3 178,054 + -1.9 178,054 + -3.7 178,054 + -2.5 178,055 - -2.1 178,055 - -2.3 178,055 - -3.2 178,055 - -3.4 178,055 - -2.0 178,056 + -1.7 178,056 + -4.2 178,056 + -3.0 178,056 + -2.9 178,056 + -2.4 178,056 + -4.4 178,056 + -0.5 178,057 - +2.1 178,057 - -1.3 178,057 - -1.0 178,057 - -1.9 178,057 - -1.8 178,057 - -3.2 178,057 - -2.9 178,057 - -1.3 178,057 - -3.1 178,057 - -4.5 178,057 - +1.7 178,057 - -2.1 178,060 + -1.8 178,074 + -5.1 178,074 + -0.4 178,078 + -4.0 178,079 - +0.1 178,079 - +1.6 178,079 - -0.4 178,116 - HMPREF1078_RS11280 0.10 -0.2 178,145 + HMPREF1078_RS11280 0.12 +1.1 178,167 + HMPREF1078_RS11280 0.14 -4.9 178,167 + HMPREF1078_RS11280 0.14 -2.7 178,167 + HMPREF1078_RS11280 0.14 +0.1 178,168 - HMPREF1078_RS11280 0.14 -1.4 178,168 - HMPREF1078_RS11280 0.14 -2.1 178,187 - HMPREF1078_RS11280 0.15 -5.0 178,213 + HMPREF1078_RS11280 0.17 -4.3 178,214 - HMPREF1078_RS11280 0.17 -3.0 178,223 - HMPREF1078_RS11280 0.18 -3.7 178,231 - HMPREF1078_RS11280 0.18 -1.6 178,339 + HMPREF1078_RS11280 0.26 -1.0 178,339 + HMPREF1078_RS11280 0.26 -1.9 178,340 - HMPREF1078_RS11280 0.26 -1.2 178,340 - HMPREF1078_RS11280 0.26 -1.3 178,340 - HMPREF1078_RS11280 0.26 -2.5 178,348 + HMPREF1078_RS11280 0.27 -1.9 178,348 + HMPREF1078_RS11280 0.27 -3.6 178,348 + HMPREF1078_RS11280 0.27 -2.4 178,348 + HMPREF1078_RS11280 0.27 -2.4 178,349 - HMPREF1078_RS11280 0.27 -3.5 178,349 - HMPREF1078_RS11280 0.27 -3.9 178,349 - HMPREF1078_RS11280 0.27 -1.3 178,394 - HMPREF1078_RS11280 0.30 -0.7 178,396 - HMPREF1078_RS11280 0.30 -4.9 178,458 - HMPREF1078_RS11280 0.34 -0.4 178,474 + HMPREF1078_RS11280 0.35 +1.1 178,475 - HMPREF1078_RS11280 0.36 -4.0 178,475 - HMPREF1078_RS11280 0.36 -0.7 178,475 - HMPREF1078_RS11280 0.36 -3.2 178,475 - HMPREF1078_RS11280 0.36 -2.1 178,476 + HMPREF1078_RS11280 0.36 -3.1 178,516 + HMPREF1078_RS11280 0.38 -3.9 178,517 - HMPREF1078_RS11280 0.38 -3.3 178,517 - HMPREF1078_RS11280 0.38 -2.0 178,534 + HMPREF1078_RS11280 0.40 -4.3 178,565 + HMPREF1078_RS11280 0.42 -3.2 178,565 + HMPREF1078_RS11280 0.42 -2.8 178,565 + HMPREF1078_RS11280 0.42 -3.3 178,565 + HMPREF1078_RS11280 0.42 -4.9 178,565 + HMPREF1078_RS11280 0.42 -3.5 178,566 - HMPREF1078_RS11280 0.42 -2.3 178,566 - HMPREF1078_RS11280 0.42 -3.3 178,566 - HMPREF1078_RS11280 0.42 -1.3 178,566 - HMPREF1078_RS11280 0.42 -0.7 178,566 - HMPREF1078_RS11280 0.42 -2.6 178,566 - HMPREF1078_RS11280 0.42 -1.1 178,567 + HMPREF1078_RS11280 0.42 -2.8 178,567 + HMPREF1078_RS11280 0.42 -0.9 178,567 + HMPREF1078_RS11280 0.42 -3.6 178,568 - HMPREF1078_RS11280 0.42 -4.5 178,568 - HMPREF1078_RS11280 0.42 -2.4 178,636 + HMPREF1078_RS11280 0.47 -2.4 178,637 - HMPREF1078_RS11280 0.47 -0.5 178,646 - HMPREF1078_RS11280 0.47 -2.8 178,665 + HMPREF1078_RS11280 0.49 -2.6 178,680 + HMPREF1078_RS11280 0.50 -3.5 178,680 + HMPREF1078_RS11280 0.50 -3.9 178,680 + HMPREF1078_RS11280 0.50 -2.0 178,728 - HMPREF1078_RS11280 0.53 +0.2 178,793 + HMPREF1078_RS11280 0.58 -4.6 178,793 + HMPREF1078_RS11280 0.58 -2.3 178,800 - HMPREF1078_RS11280 0.58 -1.5 178,810 + HMPREF1078_RS11280 0.59 -3.2 178,810 + HMPREF1078_RS11280 0.59 -3.0 178,811 - HMPREF1078_RS11280 0.59 -0.7 178,811 - HMPREF1078_RS11280 0.59 -0.0 178,812 + HMPREF1078_RS11280 0.59 -3.0 178,812 + HMPREF1078_RS11280 0.59 -3.0 178,812 + HMPREF1078_RS11280 0.59 -4.6 178,812 + HMPREF1078_RS11280 0.59 -3.7 178,812 + HMPREF1078_RS11280 0.59 -1.4 178,812 + HMPREF1078_RS11280 0.59 -2.4 178,813 - HMPREF1078_RS11280 0.59 -2.2 178,813 - HMPREF1078_RS11280 0.59 -1.2 178,813 - HMPREF1078_RS11280 0.59 -3.4 178,813 - HMPREF1078_RS11280 0.59 -1.8 178,813 - HMPREF1078_RS11280 0.59 -3.0 178,816 + HMPREF1078_RS11280 0.59 -1.9 178,816 + HMPREF1078_RS11280 0.59 -3.5 178,816 + HMPREF1078_RS11280 0.59 -4.4 178,817 - HMPREF1078_RS11280 0.59 -2.4 178,817 - HMPREF1078_RS11280 0.59 -1.3 178,817 - HMPREF1078_RS11280 0.59 -0.4 178,817 - HMPREF1078_RS11280 0.59 -4.1 178,817 - HMPREF1078_RS11280 0.59 -1.7 178,817 - HMPREF1078_RS11280 0.59 -0.9 178,817 - HMPREF1078_RS11280 0.59 -2.6 178,817 - HMPREF1078_RS11280 0.59 -1.9 178,817 - HMPREF1078_RS11280 0.59 -0.6 178,819 - HMPREF1078_RS11280 0.60 -2.1 178,819 - HMPREF1078_RS11280 0.60 -1.9 178,819 - HMPREF1078_RS11280 0.60 -2.0 178,821 + HMPREF1078_RS11280 0.60 -3.2 178,854 - HMPREF1078_RS11280 0.62 -1.9
Or see this region's nucleotide sequence