Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10910

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10905 and HMPREF1078_RS10910 are separated by 160 nucleotidesHMPREF1078_RS10910 and HMPREF1078_RS10915 are separated by 58 nucleotides HMPREF1078_RS10905: HMPREF1078_RS10905 - ribose-phosphate pyrophosphokinase, at 88,155 to 89,096 _RS10905 HMPREF1078_RS10910: HMPREF1078_RS10910 - alpha-amylase family protein, at 89,257 to 90,948 _RS10910 HMPREF1078_RS10915: HMPREF1078_RS10915 - patatin-like phospholipase family protein, at 91,007 to 91,846 _RS10915 Position (kb) 89 90 91Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 89.124 kb on - strandat 89.188 kb on - strandat 89.233 kb on - strandat 89.246 kb on + strandat 89.254 kb on - strandat 89.288 kb on + strandat 89.288 kb on + strandat 89.296 kb on + strandat 89.297 kb on - strandat 89.369 kb on - strandat 89.487 kb on - strand, within HMPREF1078_RS10910at 89.490 kb on + strand, within HMPREF1078_RS10910at 89.521 kb on - strand, within HMPREF1078_RS10910at 89.546 kb on + strand, within HMPREF1078_RS10910at 89.546 kb on + strand, within HMPREF1078_RS10910at 89.546 kb on + strand, within HMPREF1078_RS10910at 89.547 kb on - strand, within HMPREF1078_RS10910at 89.547 kb on - strand, within HMPREF1078_RS10910at 89.596 kb on + strand, within HMPREF1078_RS10910at 89.597 kb on - strand, within HMPREF1078_RS10910at 89.599 kb on - strand, within HMPREF1078_RS10910at 89.599 kb on - strand, within HMPREF1078_RS10910at 89.599 kb on - strand, within HMPREF1078_RS10910at 89.599 kb on - strand, within HMPREF1078_RS10910at 89.615 kb on + strand, within HMPREF1078_RS10910at 89.616 kb on - strand, within HMPREF1078_RS10910at 89.616 kb on - strand, within HMPREF1078_RS10910at 89.686 kb on - strand, within HMPREF1078_RS10910at 89.790 kb on - strand, within HMPREF1078_RS10910at 89.920 kb on - strand, within HMPREF1078_RS10910at 89.920 kb on - strand, within HMPREF1078_RS10910at 89.920 kb on - strand, within HMPREF1078_RS10910at 89.920 kb on - strand, within HMPREF1078_RS10910at 89.958 kb on + strand, within HMPREF1078_RS10910at 89.959 kb on - strand, within HMPREF1078_RS10910at 90.005 kb on + strand, within HMPREF1078_RS10910at 90.006 kb on - strand, within HMPREF1078_RS10910at 90.023 kb on + strand, within HMPREF1078_RS10910at 90.023 kb on + strand, within HMPREF1078_RS10910at 90.023 kb on + strand, within HMPREF1078_RS10910at 90.023 kb on + strand, within HMPREF1078_RS10910at 90.024 kb on - strand, within HMPREF1078_RS10910at 90.024 kb on - strand, within HMPREF1078_RS10910at 90.052 kb on - strand, within HMPREF1078_RS10910at 90.054 kb on - strand, within HMPREF1078_RS10910at 90.090 kb on + strand, within HMPREF1078_RS10910at 90.090 kb on + strand, within HMPREF1078_RS10910at 90.104 kb on + strand, within HMPREF1078_RS10910at 90.104 kb on + strand, within HMPREF1078_RS10910at 90.104 kb on + strand, within HMPREF1078_RS10910at 90.104 kb on + strand, within HMPREF1078_RS10910at 90.104 kb on + strand, within HMPREF1078_RS10910at 90.105 kb on - strand, within HMPREF1078_RS10910at 90.105 kb on - strand, within HMPREF1078_RS10910at 90.105 kb on - strand, within HMPREF1078_RS10910at 90.234 kb on + strand, within HMPREF1078_RS10910at 90.235 kb on - strand, within HMPREF1078_RS10910at 90.275 kb on + strand, within HMPREF1078_RS10910at 90.308 kb on + strand, within HMPREF1078_RS10910at 90.431 kb on - strand, within HMPREF1078_RS10910at 90.433 kb on - strand, within HMPREF1078_RS10910at 90.435 kb on - strand, within HMPREF1078_RS10910at 90.437 kb on + strand, within HMPREF1078_RS10910at 90.445 kb on - strand, within HMPREF1078_RS10910at 90.451 kb on - strand, within HMPREF1078_RS10910at 90.500 kb on + strand, within HMPREF1078_RS10910at 90.500 kb on + strand, within HMPREF1078_RS10910at 90.500 kb on + strand, within HMPREF1078_RS10910at 90.500 kb on + strand, within HMPREF1078_RS10910at 90.501 kb on - strand, within HMPREF1078_RS10910at 90.543 kb on + strand, within HMPREF1078_RS10910at 90.544 kb on - strand, within HMPREF1078_RS10910at 90.544 kb on - strand, within HMPREF1078_RS10910at 90.555 kb on - strand, within HMPREF1078_RS10910at 90.562 kb on + strand, within HMPREF1078_RS10910at 90.563 kb on - strand, within HMPREF1078_RS10910at 90.649 kb on + strand, within HMPREF1078_RS10910at 90.650 kb on - strand, within HMPREF1078_RS10910at 90.652 kb on - strand, within HMPREF1078_RS10910at 90.652 kb on - strand, within HMPREF1078_RS10910at 90.652 kb on - strand, within HMPREF1078_RS10910at 90.656 kb on + strand, within HMPREF1078_RS10910at 90.697 kb on + strand, within HMPREF1078_RS10910at 90.721 kb on + strand, within HMPREF1078_RS10910at 90.721 kb on + strand, within HMPREF1078_RS10910at 90.735 kb on + strand, within HMPREF1078_RS10910at 90.736 kb on - strand, within HMPREF1078_RS10910at 90.736 kb on - strand, within HMPREF1078_RS10910at 90.744 kb on + strand, within HMPREF1078_RS10910at 90.780 kb on + strandat 90.781 kb on - strandat 90.801 kb on + strandat 90.862 kb on - strandat 90.892 kb on - strandat 90.892 kb on - strandat 90.892 kb on - strandat 90.921 kb on - strandat 90.921 kb on - strandat 90.922 kb on + strandat 90.922 kb on + strandat 90.922 kb on + strandat 90.922 kb on + strandat 90.922 kb on + strandat 90.923 kb on - strandat 90.923 kb on - strandat 90.925 kb on + strandat 90.925 kb on + strandat 90.926 kb on - strandat 90.926 kb on - strandat 90.926 kb on - strandat 90.933 kb on + strandat 90.933 kb on + strandat 90.934 kb on - strandat 90.934 kb on - strandat 90.934 kb on - strandat 90.934 kb on - strandat 90.934 kb on - strandat 90.934 kb on - strandat 90.966 kb on + strandat 90.966 kb on + strandat 90.966 kb on + strandat 90.967 kb on - strandat 90.967 kb on - strandat 91.063 kb on - strandat 91.158 kb on + strand, within HMPREF1078_RS10915at 91.158 kb on + strand, within HMPREF1078_RS10915at 91.159 kb on - strand, within HMPREF1078_RS10915at 91.159 kb on - strand, within HMPREF1078_RS10915at 91.159 kb on - strand, within HMPREF1078_RS10915at 91.162 kb on + strand, within HMPREF1078_RS10915at 91.162 kb on + strand, within HMPREF1078_RS10915at 91.231 kb on + strand, within HMPREF1078_RS10915at 91.231 kb on + strand, within HMPREF1078_RS10915at 91.231 kb on + strand, within HMPREF1078_RS10915at 91.231 kb on + strand, within HMPREF1078_RS10915at 91.231 kb on + strand, within HMPREF1078_RS10915at 91.232 kb on - strand, within HMPREF1078_RS10915at 91.232 kb on - strand, within HMPREF1078_RS10915at 91.232 kb on - strand, within HMPREF1078_RS10915at 91.232 kb on - strand, within HMPREF1078_RS10915at 91.232 kb on - strand, within HMPREF1078_RS10915at 91.233 kb on + strand, within HMPREF1078_RS10915at 91.233 kb on + strand, within HMPREF1078_RS10915at 91.233 kb on + strand, within HMPREF1078_RS10915at 91.239 kb on + strand, within HMPREF1078_RS10915at 91.239 kb on + strand, within HMPREF1078_RS10915at 91.239 kb on + strand, within HMPREF1078_RS10915at 91.315 kb on + strand, within HMPREF1078_RS10915at 91.315 kb on + strand, within HMPREF1078_RS10915at 91.315 kb on + strand, within HMPREF1078_RS10915at 91.378 kb on - strand, within HMPREF1078_RS10915at 91.421 kb on - strand, within HMPREF1078_RS10915at 91.446 kb on - strand, within HMPREF1078_RS10915at 91.538 kb on - strand, within HMPREF1078_RS10915at 91.666 kb on + strand, within HMPREF1078_RS10915at 91.666 kb on + strand, within HMPREF1078_RS10915at 91.666 kb on + strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.667 kb on - strand, within HMPREF1078_RS10915at 91.669 kb on - strand, within HMPREF1078_RS10915at 91.712 kb on - strand, within HMPREF1078_RS10915at 91.756 kb on + strand, within HMPREF1078_RS10915at 91.825 kb on + strandat 91.825 kb on + strandat 91.826 kb on - strandat 91.862 kb on + strandat 91.877 kb on - strandat 91.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
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89,124 - +0.0
89,188 - -1.3
89,233 - +0.7
89,246 + -0.2
89,254 - -0.9
89,288 + -1.9
89,288 + -1.4
89,296 + -3.5
89,297 - -1.2
89,369 - -1.8
89,487 - HMPREF1078_RS10910 0.14 -3.8
89,490 + HMPREF1078_RS10910 0.14 -1.0
89,521 - HMPREF1078_RS10910 0.16 -5.6
89,546 + HMPREF1078_RS10910 0.17 -1.4
89,546 + HMPREF1078_RS10910 0.17 -1.0
89,546 + HMPREF1078_RS10910 0.17 -2.7
89,547 - HMPREF1078_RS10910 0.17 -2.8
89,547 - HMPREF1078_RS10910 0.17 -3.6
89,596 + HMPREF1078_RS10910 0.20 -0.4
89,597 - HMPREF1078_RS10910 0.20 -2.3
89,599 - HMPREF1078_RS10910 0.20 -1.8
89,599 - HMPREF1078_RS10910 0.20 -3.6
89,599 - HMPREF1078_RS10910 0.20 -1.5
89,599 - HMPREF1078_RS10910 0.20 -1.8
89,615 + HMPREF1078_RS10910 0.21 -0.9
89,616 - HMPREF1078_RS10910 0.21 -1.9
89,616 - HMPREF1078_RS10910 0.21 -3.2
89,686 - HMPREF1078_RS10910 0.25 -4.2
89,790 - HMPREF1078_RS10910 0.32 -0.8
89,920 - HMPREF1078_RS10910 0.39 -1.7
89,920 - HMPREF1078_RS10910 0.39 -2.4
89,920 - HMPREF1078_RS10910 0.39 -2.4
89,920 - HMPREF1078_RS10910 0.39 -2.6
89,958 + HMPREF1078_RS10910 0.41 -0.8
89,959 - HMPREF1078_RS10910 0.41 -2.0
90,005 + HMPREF1078_RS10910 0.44 -3.1
90,006 - HMPREF1078_RS10910 0.44 -4.8
90,023 + HMPREF1078_RS10910 0.45 -3.2
90,023 + HMPREF1078_RS10910 0.45 -2.2
90,023 + HMPREF1078_RS10910 0.45 -3.3
90,023 + HMPREF1078_RS10910 0.45 -2.8
90,024 - HMPREF1078_RS10910 0.45 -2.9
90,024 - HMPREF1078_RS10910 0.45 -4.5
90,052 - HMPREF1078_RS10910 0.47 -0.9
90,054 - HMPREF1078_RS10910 0.47 -3.5
90,090 + HMPREF1078_RS10910 0.49 -2.0
90,090 + HMPREF1078_RS10910 0.49 -2.6
90,104 + HMPREF1078_RS10910 0.50 -2.7
90,104 + HMPREF1078_RS10910 0.50 -2.2
90,104 + HMPREF1078_RS10910 0.50 -0.7
90,104 + HMPREF1078_RS10910 0.50 -2.2
90,104 + HMPREF1078_RS10910 0.50 -1.3
90,105 - HMPREF1078_RS10910 0.50 -2.8
90,105 - HMPREF1078_RS10910 0.50 -1.9
90,105 - HMPREF1078_RS10910 0.50 -1.0
90,234 + HMPREF1078_RS10910 0.58 -3.3
90,235 - HMPREF1078_RS10910 0.58 -1.6
90,275 + HMPREF1078_RS10910 0.60 -2.9
90,308 + HMPREF1078_RS10910 0.62 -3.9
90,431 - HMPREF1078_RS10910 0.69 -2.0
90,433 - HMPREF1078_RS10910 0.70 -1.3
90,435 - HMPREF1078_RS10910 0.70 -2.3
90,437 + HMPREF1078_RS10910 0.70 -0.2
90,445 - HMPREF1078_RS10910 0.70 -1.2
90,451 - HMPREF1078_RS10910 0.71 -1.7
90,500 + HMPREF1078_RS10910 0.73 -2.2
90,500 + HMPREF1078_RS10910 0.73 -1.0
90,500 + HMPREF1078_RS10910 0.73 -1.9
90,500 + HMPREF1078_RS10910 0.73 -2.1
90,501 - HMPREF1078_RS10910 0.74 -2.6
90,543 + HMPREF1078_RS10910 0.76 -4.6
90,544 - HMPREF1078_RS10910 0.76 -2.8
90,544 - HMPREF1078_RS10910 0.76 -3.4
90,555 - HMPREF1078_RS10910 0.77 -3.2
90,562 + HMPREF1078_RS10910 0.77 -4.0
90,563 - HMPREF1078_RS10910 0.77 -2.5
90,649 + HMPREF1078_RS10910 0.82 -2.2
90,650 - HMPREF1078_RS10910 0.82 -4.1
90,652 - HMPREF1078_RS10910 0.82 -1.9
90,652 - HMPREF1078_RS10910 0.82 -4.1
90,652 - HMPREF1078_RS10910 0.82 -1.2
90,656 + HMPREF1078_RS10910 0.83 -2.5
90,697 + HMPREF1078_RS10910 0.85 -2.9
90,721 + HMPREF1078_RS10910 0.87 -1.8
90,721 + HMPREF1078_RS10910 0.87 -2.7
90,735 + HMPREF1078_RS10910 0.87 -3.3
90,736 - HMPREF1078_RS10910 0.87 -3.1
90,736 - HMPREF1078_RS10910 0.87 -4.3
90,744 + HMPREF1078_RS10910 0.88 -2.0
90,780 + -3.1
90,781 - -1.7
90,801 + -1.2
90,862 - -2.8
90,892 - -0.9
90,892 - -0.2
90,892 - -1.5
90,921 - +1.1
90,921 - -3.9
90,922 + -3.6
90,922 + +0.1
90,922 + -2.3
90,922 + -3.0
90,922 + -1.4
90,923 - -0.9
90,923 - -4.3
90,925 + -2.7
90,925 + +1.9
90,926 - -4.2
90,926 - -1.4
90,926 - -3.6
90,933 + -2.4
90,933 + -0.9
90,934 - -2.4
90,934 - -1.3
90,934 - -1.8
90,934 - -2.4
90,934 - -3.3
90,934 - -0.4
90,966 + -1.8
90,966 + -2.8
90,966 + -2.1
90,967 - -0.1
90,967 - -1.4
91,063 - +0.7
91,158 + HMPREF1078_RS10915 0.18 -1.0
91,158 + HMPREF1078_RS10915 0.18 -1.3
91,159 - HMPREF1078_RS10915 0.18 +1.2
91,159 - HMPREF1078_RS10915 0.18 +2.1
91,159 - HMPREF1078_RS10915 0.18 -1.3
91,162 + HMPREF1078_RS10915 0.18 -3.5
91,162 + HMPREF1078_RS10915 0.18 -1.2
91,231 + HMPREF1078_RS10915 0.27 -2.1
91,231 + HMPREF1078_RS10915 0.27 -1.4
91,231 + HMPREF1078_RS10915 0.27 -3.9
91,231 + HMPREF1078_RS10915 0.27 -1.8
91,231 + HMPREF1078_RS10915 0.27 -0.7
91,232 - HMPREF1078_RS10915 0.27 -0.5
91,232 - HMPREF1078_RS10915 0.27 -0.4
91,232 - HMPREF1078_RS10915 0.27 +0.6
91,232 - HMPREF1078_RS10915 0.27 +0.8
91,232 - HMPREF1078_RS10915 0.27 +0.0
91,233 + HMPREF1078_RS10915 0.27 -2.8
91,233 + HMPREF1078_RS10915 0.27 -3.1
91,233 + HMPREF1078_RS10915 0.27 -1.5
91,239 + HMPREF1078_RS10915 0.28 -2.9
91,239 + HMPREF1078_RS10915 0.28 -3.4
91,239 + HMPREF1078_RS10915 0.28 -3.1
91,315 + HMPREF1078_RS10915 0.37 -0.2
91,315 + HMPREF1078_RS10915 0.37 -2.4
91,315 + HMPREF1078_RS10915 0.37 -3.3
91,378 - HMPREF1078_RS10915 0.44 +3.0
91,421 - HMPREF1078_RS10915 0.49 +0.1
91,446 - HMPREF1078_RS10915 0.52 +0.7
91,538 - HMPREF1078_RS10915 0.63 -0.2
91,666 + HMPREF1078_RS10915 0.78 -2.4
91,666 + HMPREF1078_RS10915 0.78 +0.6
91,666 + HMPREF1078_RS10915 0.78 -1.1
91,667 - HMPREF1078_RS10915 0.79 +0.0
91,667 - HMPREF1078_RS10915 0.79 -0.2
91,667 - HMPREF1078_RS10915 0.79 -1.9
91,667 - HMPREF1078_RS10915 0.79 +1.5
91,667 - HMPREF1078_RS10915 0.79 -1.0
91,667 - HMPREF1078_RS10915 0.79 -0.0
91,667 - HMPREF1078_RS10915 0.79 +0.6
91,667 - HMPREF1078_RS10915 0.79 -1.7
91,669 - HMPREF1078_RS10915 0.79 -1.1
91,712 - HMPREF1078_RS10915 0.84 -0.6
91,756 + HMPREF1078_RS10915 0.89 -4.0
91,825 + -2.2
91,825 + -1.9
91,826 - +2.3
91,862 + -2.8
91,877 - +1.4
91,877 - -0.1

Or see this region's nucleotide sequence