Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10655 and HMPREF1078_RS10660 are separated by 119 nucleotides HMPREF1078_RS10660 and HMPREF1078_RS10665 are separated by 31 nucleotides
HMPREF1078_RS10655: HMPREF1078_RS10655 - glutamate-5-semialdehyde dehydrogenase, at 34,617 to 35,861
_RS10655
HMPREF1078_RS10660: HMPREF1078_RS10660 - acetylornithine carbamoyltransferase, at 35,981 to 36,946
_RS10660
HMPREF1078_RS10665: HMPREF1078_RS10665 - outer membrane beta-barrel family protein, at 36,978 to 39,077
_RS10665
Position (kb) 35
36
37 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 35.093 kb on - strand, within HMPREF1078_RS10655 at 35.127 kb on - strand, within HMPREF1078_RS10655 at 35.227 kb on - strand, within HMPREF1078_RS10655 at 35.227 kb on - strand, within HMPREF1078_RS10655 at 35.273 kb on + strand, within HMPREF1078_RS10655 at 35.282 kb on + strand, within HMPREF1078_RS10655 at 35.283 kb on - strand, within HMPREF1078_RS10655 at 35.402 kb on - strand, within HMPREF1078_RS10655 at 35.415 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.451 kb on - strand, within HMPREF1078_RS10655 at 35.454 kb on + strand, within HMPREF1078_RS10655 at 35.548 kb on + strand, within HMPREF1078_RS10655 at 35.570 kb on + strand, within HMPREF1078_RS10655 at 35.613 kb on + strand, within HMPREF1078_RS10655 at 35.700 kb on + strand, within HMPREF1078_RS10655 at 35.710 kb on + strand, within HMPREF1078_RS10655 at 35.710 kb on + strand, within HMPREF1078_RS10655 at 35.711 kb on - strand, within HMPREF1078_RS10655 at 35.714 kb on + strand, within HMPREF1078_RS10655 at 35.779 kb on + strand at 35.779 kb on + strand at 35.779 kb on + strand at 35.780 kb on - strand at 35.820 kb on + strand at 35.826 kb on + strand at 35.826 kb on + strand at 35.826 kb on + strand at 35.827 kb on - strand at 35.828 kb on + strand at 35.828 kb on + strand at 35.829 kb on - strand at 35.829 kb on - strand at 35.859 kb on + strand at 35.877 kb on + strand at 35.878 kb on - strand at 35.881 kb on - strand at 35.883 kb on + strand at 35.888 kb on + strand at 35.888 kb on + strand at 35.889 kb on - strand at 35.902 kb on + strand at 35.908 kb on + strand at 35.909 kb on - strand at 35.980 kb on + strand at 35.980 kb on + strand at 36.000 kb on + strand at 36.001 kb on - strand at 36.105 kb on + strand, within HMPREF1078_RS10660 at 36.105 kb on + strand, within HMPREF1078_RS10660 at 36.105 kb on + strand, within HMPREF1078_RS10660 at 36.163 kb on - strand, within HMPREF1078_RS10660 at 36.163 kb on - strand, within HMPREF1078_RS10660 at 36.167 kb on - strand, within HMPREF1078_RS10660 at 36.288 kb on - strand, within HMPREF1078_RS10660 at 36.306 kb on + strand, within HMPREF1078_RS10660 at 36.306 kb on + strand, within HMPREF1078_RS10660 at 36.307 kb on - strand, within HMPREF1078_RS10660 at 36.358 kb on - strand, within HMPREF1078_RS10660 at 36.358 kb on - strand, within HMPREF1078_RS10660 at 36.358 kb on - strand, within HMPREF1078_RS10660 at 36.461 kb on + strand, within HMPREF1078_RS10660 at 36.636 kb on + strand, within HMPREF1078_RS10660 at 36.641 kb on + strand, within HMPREF1078_RS10660 at 36.642 kb on - strand, within HMPREF1078_RS10660 at 36.642 kb on - strand, within HMPREF1078_RS10660 at 36.680 kb on + strand, within HMPREF1078_RS10660 at 36.701 kb on + strand, within HMPREF1078_RS10660 at 36.717 kb on - strand, within HMPREF1078_RS10660 at 36.820 kb on + strand, within HMPREF1078_RS10660 at 36.820 kb on + strand, within HMPREF1078_RS10660 at 36.821 kb on - strand, within HMPREF1078_RS10660 at 36.944 kb on + strand at 36.986 kb on + strand at 36.988 kb on + strand at 36.988 kb on + strand at 36.989 kb on - strand at 37.095 kb on - strand at 37.146 kb on - strand at 37.538 kb on - strand, within HMPREF1078_RS10665 at 37.538 kb on - strand, within HMPREF1078_RS10665 at 37.544 kb on - strand, within HMPREF1078_RS10665 at 37.639 kb on + strand, within HMPREF1078_RS10665 at 37.672 kb on + strand, within HMPREF1078_RS10665 at 37.672 kb on + strand, within HMPREF1078_RS10665 at 37.673 kb on - strand, within HMPREF1078_RS10665 at 37.764 kb on + strand, within HMPREF1078_RS10665 at 37.907 kb on + strand, within HMPREF1078_RS10665 at 37.908 kb on - strand, within HMPREF1078_RS10665 at 37.909 kb on + strand, within HMPREF1078_RS10665 at 37.909 kb on + strand, within HMPREF1078_RS10665 at 37.909 kb on + strand, within HMPREF1078_RS10665
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 35,093 - HMPREF1078_RS10655 0.38 -1.3 35,127 - HMPREF1078_RS10655 0.41 -0.3 35,227 - HMPREF1078_RS10655 0.49 -1.7 35,227 - HMPREF1078_RS10655 0.49 -0.4 35,273 + HMPREF1078_RS10655 0.53 +0.2 35,282 + HMPREF1078_RS10655 0.53 +1.1 35,283 - HMPREF1078_RS10655 0.53 +0.1 35,402 - HMPREF1078_RS10655 0.63 +2.3 35,415 + HMPREF1078_RS10655 0.64 +0.6 35,450 + HMPREF1078_RS10655 0.67 +0.5 35,450 + HMPREF1078_RS10655 0.67 +3.1 35,450 + HMPREF1078_RS10655 0.67 -0.5 35,450 + HMPREF1078_RS10655 0.67 +1.3 35,451 - HMPREF1078_RS10655 0.67 +0.4 35,454 + HMPREF1078_RS10655 0.67 -1.6 35,548 + HMPREF1078_RS10655 0.75 +1.2 35,570 + HMPREF1078_RS10655 0.77 +0.6 35,613 + HMPREF1078_RS10655 0.80 -4.1 35,700 + HMPREF1078_RS10655 0.87 -1.3 35,710 + HMPREF1078_RS10655 0.88 +0.1 35,710 + HMPREF1078_RS10655 0.88 -0.4 35,711 - HMPREF1078_RS10655 0.88 +1.1 35,714 + HMPREF1078_RS10655 0.88 +2.7 35,779 + +2.3 35,779 + +0.1 35,779 + -0.0 35,780 - +1.7 35,820 + +1.1 35,826 + +0.6 35,826 + +1.9 35,826 + -3.9 35,827 - +1.1 35,828 + +1.2 35,828 + -1.5 35,829 - -0.7 35,829 - +0.2 35,859 + -2.7 35,877 + -0.2 35,878 - +1.1 35,881 - +1.5 35,883 + +0.6 35,888 + +0.7 35,888 + -2.9 35,889 - -0.4 35,902 + +1.3 35,908 + -2.9 35,909 - -3.1 35,980 + -2.9 35,980 + -4.7 36,000 + -3.9 36,001 - -3.9 36,105 + HMPREF1078_RS10660 0.13 -1.8 36,105 + HMPREF1078_RS10660 0.13 -1.9 36,105 + HMPREF1078_RS10660 0.13 -4.1 36,163 - HMPREF1078_RS10660 0.19 -2.9 36,163 - HMPREF1078_RS10660 0.19 -3.9 36,167 - HMPREF1078_RS10660 0.19 -3.4 36,288 - HMPREF1078_RS10660 0.32 -2.9 36,306 + HMPREF1078_RS10660 0.34 -4.8 36,306 + HMPREF1078_RS10660 0.34 -2.6 36,307 - HMPREF1078_RS10660 0.34 -1.3 36,358 - HMPREF1078_RS10660 0.39 -2.7 36,358 - HMPREF1078_RS10660 0.39 -3.6 36,358 - HMPREF1078_RS10660 0.39 -3.2 36,461 + HMPREF1078_RS10660 0.50 -4.0 36,636 + HMPREF1078_RS10660 0.68 -3.1 36,641 + HMPREF1078_RS10660 0.68 -4.3 36,642 - HMPREF1078_RS10660 0.68 -3.6 36,642 - HMPREF1078_RS10660 0.68 -4.4 36,680 + HMPREF1078_RS10660 0.72 -4.4 36,701 + HMPREF1078_RS10660 0.75 -2.6 36,717 - HMPREF1078_RS10660 0.76 -4.9 36,820 + HMPREF1078_RS10660 0.87 -5.2 36,820 + HMPREF1078_RS10660 0.87 -0.2 36,821 - HMPREF1078_RS10660 0.87 -2.4 36,944 + +1.2 36,986 + -0.9 36,988 + -0.0 36,988 + +2.1 36,989 - +0.7 37,095 - +1.9 37,146 - +0.3 37,538 - HMPREF1078_RS10665 0.27 +0.1 37,538 - HMPREF1078_RS10665 0.27 +1.3 37,544 - HMPREF1078_RS10665 0.27 +0.3 37,639 + HMPREF1078_RS10665 0.31 -1.1 37,672 + HMPREF1078_RS10665 0.33 -0.4 37,672 + HMPREF1078_RS10665 0.33 +0.9 37,673 - HMPREF1078_RS10665 0.33 +0.5 37,764 + HMPREF1078_RS10665 0.37 +0.1 37,907 + HMPREF1078_RS10665 0.44 -0.9 37,908 - HMPREF1078_RS10665 0.44 +3.5 37,909 + HMPREF1078_RS10665 0.44 -1.9 37,909 + HMPREF1078_RS10665 0.44 +0.7 37,909 + HMPREF1078_RS10665 0.44 +0.8
Or see this region's nucleotide sequence