Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS18645 and HMPREF1078_RS08170 are separated by 210 nucleotides HMPREF1078_RS08170 and HMPREF1078_RS08175 are separated by 54 nucleotides HMPREF1078_RS08175 and HMPREF1078_RS08180 are separated by 16 nucleotides
HMPREF1078_RS18645: HMPREF1078_RS18645 - transposase, at 202,510 to 202,638
_RS18645
HMPREF1078_RS08170: HMPREF1078_RS08170 - methylglyoxal synthase, at 202,849 to 203,385
_RS08170
HMPREF1078_RS08175: HMPREF1078_RS08175 - arginase family protein, at 203,440 to 204,249
_RS08175
HMPREF1078_RS08180: HMPREF1078_RS08180 - alpha-glucan family phosphorylase, at 204,266 to 206,824
_RS08180
Position (kb) 203
204
205 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 202.445 kb on + strand at 202.456 kb on - strand at 202.485 kb on + strand at 202.491 kb on + strand at 202.491 kb on + strand at 202.624 kb on - strand, within HMPREF1078_RS18645 at 202.630 kb on + strand at 202.631 kb on - strand at 202.631 kb on - strand at 202.637 kb on - strand at 202.716 kb on - strand at 202.722 kb on + strand at 202.723 kb on - strand at 202.757 kb on - strand at 202.765 kb on - strand at 202.778 kb on + strand at 202.778 kb on + strand at 202.779 kb on - strand at 202.782 kb on + strand at 202.782 kb on + strand at 202.782 kb on + strand at 202.783 kb on - strand at 202.783 kb on - strand at 202.783 kb on - strand at 202.796 kb on + strand at 202.796 kb on + strand at 202.812 kb on + strand at 202.812 kb on + strand at 202.813 kb on - strand at 202.822 kb on + strand at 202.823 kb on - strand at 202.823 kb on - strand at 202.824 kb on + strand at 202.824 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.828 kb on + strand at 202.837 kb on - strand at 202.837 kb on - strand at 202.843 kb on + strand at 202.843 kb on + strand at 202.843 kb on + strand at 202.864 kb on - strand at 202.912 kb on + strand, within HMPREF1078_RS08170 at 202.943 kb on + strand, within HMPREF1078_RS08170 at 202.943 kb on + strand, within HMPREF1078_RS08170 at 202.965 kb on + strand, within HMPREF1078_RS08170 at 202.973 kb on + strand, within HMPREF1078_RS08170 at 203.002 kb on - strand, within HMPREF1078_RS08170 at 203.004 kb on + strand, within HMPREF1078_RS08170 at 203.005 kb on - strand, within HMPREF1078_RS08170 at 203.044 kb on - strand, within HMPREF1078_RS08170 at 203.098 kb on + strand, within HMPREF1078_RS08170 at 203.116 kb on - strand, within HMPREF1078_RS08170 at 203.130 kb on - strand, within HMPREF1078_RS08170 at 203.130 kb on - strand, within HMPREF1078_RS08170 at 203.147 kb on - strand, within HMPREF1078_RS08170 at 203.252 kb on - strand, within HMPREF1078_RS08170 at 203.266 kb on - strand, within HMPREF1078_RS08170 at 203.271 kb on + strand, within HMPREF1078_RS08170 at 203.271 kb on + strand, within HMPREF1078_RS08170 at 203.272 kb on - strand, within HMPREF1078_RS08170 at 203.277 kb on - strand, within HMPREF1078_RS08170 at 203.290 kb on + strand, within HMPREF1078_RS08170 at 203.323 kb on + strand, within HMPREF1078_RS08170 at 203.323 kb on + strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.324 kb on - strand, within HMPREF1078_RS08170 at 203.392 kb on - strand at 203.418 kb on + strand at 203.419 kb on - strand at 203.419 kb on - strand at 203.419 kb on - strand at 203.421 kb on - strand at 203.421 kb on - strand at 203.569 kb on + strand, within HMPREF1078_RS08175 at 203.569 kb on + strand, within HMPREF1078_RS08175 at 203.572 kb on + strand, within HMPREF1078_RS08175 at 203.573 kb on - strand, within HMPREF1078_RS08175 at 203.683 kb on + strand, within HMPREF1078_RS08175 at 203.709 kb on + strand, within HMPREF1078_RS08175 at 203.709 kb on + strand, within HMPREF1078_RS08175 at 203.709 kb on + strand, within HMPREF1078_RS08175 at 203.755 kb on - strand, within HMPREF1078_RS08175 at 203.828 kb on - strand, within HMPREF1078_RS08175 at 203.833 kb on - strand, within HMPREF1078_RS08175 at 203.856 kb on + strand, within HMPREF1078_RS08175 at 203.867 kb on - strand, within HMPREF1078_RS08175 at 203.867 kb on - strand, within HMPREF1078_RS08175 at 203.867 kb on - strand, within HMPREF1078_RS08175 at 203.868 kb on + strand, within HMPREF1078_RS08175 at 203.869 kb on - strand, within HMPREF1078_RS08175 at 203.869 kb on - strand, within HMPREF1078_RS08175 at 203.869 kb on - strand, within HMPREF1078_RS08175 at 204.097 kb on - strand, within HMPREF1078_RS08175 at 204.097 kb on - strand, within HMPREF1078_RS08175 at 204.097 kb on - strand, within HMPREF1078_RS08175 at 204.097 kb on - strand, within HMPREF1078_RS08175 at 204.125 kb on - strand, within HMPREF1078_RS08175 at 204.133 kb on - strand, within HMPREF1078_RS08175 at 204.162 kb on - strand, within HMPREF1078_RS08175 at 204.162 kb on - strand, within HMPREF1078_RS08175 at 204.234 kb on + strand at 204.235 kb on - strand at 204.257 kb on + strand at 204.258 kb on - strand at 204.278 kb on + strand at 204.279 kb on - strand at 204.279 kb on - strand at 204.316 kb on - strand at 204.325 kb on - strand at 204.328 kb on + strand at 204.329 kb on - strand at 204.379 kb on + strand at 204.386 kb on - strand at 204.386 kb on - strand at 204.389 kb on + strand at 204.432 kb on + strand at 204.432 kb on + strand at 204.432 kb on + strand at 204.434 kb on + strand at 204.434 kb on + strand at 204.434 kb on + strand at 204.435 kb on - strand at 204.435 kb on - strand at 204.435 kb on - strand at 204.464 kb on - strand at 204.528 kb on + strand, within HMPREF1078_RS08180 at 204.696 kb on + strand, within HMPREF1078_RS08180 at 204.697 kb on - strand, within HMPREF1078_RS08180 at 204.708 kb on + strand, within HMPREF1078_RS08180 at 204.708 kb on + strand, within HMPREF1078_RS08180 at 204.709 kb on - strand, within HMPREF1078_RS08180 at 204.709 kb on - strand, within HMPREF1078_RS08180 at 204.775 kb on - strand, within HMPREF1078_RS08180 at 204.796 kb on - strand, within HMPREF1078_RS08180 at 204.819 kb on + strand, within HMPREF1078_RS08180 at 204.819 kb on + strand, within HMPREF1078_RS08180 at 204.820 kb on - strand, within HMPREF1078_RS08180 at 204.820 kb on - strand, within HMPREF1078_RS08180 at 204.852 kb on + strand, within HMPREF1078_RS08180 at 204.852 kb on + strand, within HMPREF1078_RS08180 at 204.897 kb on + strand, within HMPREF1078_RS08180 at 204.898 kb on - strand, within HMPREF1078_RS08180 at 204.907 kb on + strand, within HMPREF1078_RS08180 at 204.976 kb on + strand, within HMPREF1078_RS08180 at 205.070 kb on - strand, within HMPREF1078_RS08180 at 205.118 kb on - strand, within HMPREF1078_RS08180 at 205.142 kb on + strand, within HMPREF1078_RS08180 at 205.217 kb on + strand, within HMPREF1078_RS08180
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 202,445 + +0.5 202,456 - +2.4 202,485 + +0.7 202,491 + +2.7 202,491 + -1.6 202,624 - HMPREF1078_RS18645 0.88 +2.4 202,630 + -0.0 202,631 - +0.3 202,631 - -1.4 202,637 - +3.1 202,716 - -2.1 202,722 + -1.4 202,723 - -0.9 202,757 - +0.9 202,765 - -1.9 202,778 + +3.5 202,778 + -0.9 202,779 - +2.1 202,782 + -0.8 202,782 + -0.2 202,782 + +0.5 202,783 - -0.9 202,783 - -1.8 202,783 - +1.5 202,796 + -2.7 202,796 + +1.2 202,812 + +0.8 202,812 + -2.0 202,813 - -0.2 202,822 + +3.0 202,823 - -2.1 202,823 - -1.1 202,824 + -0.4 202,824 + -1.4 202,828 + -2.1 202,828 + +0.1 202,828 + -3.9 202,828 + -0.0 202,837 - +0.8 202,837 - +1.6 202,843 + -0.2 202,843 + -3.3 202,843 + -1.8 202,864 - +0.7 202,912 + HMPREF1078_RS08170 0.12 -0.7 202,943 + HMPREF1078_RS08170 0.18 +0.6 202,943 + HMPREF1078_RS08170 0.18 +0.9 202,965 + HMPREF1078_RS08170 0.22 +0.5 202,973 + HMPREF1078_RS08170 0.23 +0.5 203,002 - HMPREF1078_RS08170 0.28 -2.4 203,004 + HMPREF1078_RS08170 0.29 +0.1 203,005 - HMPREF1078_RS08170 0.29 -0.8 203,044 - HMPREF1078_RS08170 0.36 -1.4 203,098 + HMPREF1078_RS08170 0.46 +0.4 203,116 - HMPREF1078_RS08170 0.50 +0.7 203,130 - HMPREF1078_RS08170 0.52 -1.4 203,130 - HMPREF1078_RS08170 0.52 +2.3 203,147 - HMPREF1078_RS08170 0.55 +1.7 203,252 - HMPREF1078_RS08170 0.75 +1.7 203,266 - HMPREF1078_RS08170 0.78 -3.1 203,271 + HMPREF1078_RS08170 0.79 -0.4 203,271 + HMPREF1078_RS08170 0.79 -2.0 203,272 - HMPREF1078_RS08170 0.79 +2.2 203,277 - HMPREF1078_RS08170 0.80 -0.8 203,290 + HMPREF1078_RS08170 0.82 +1.5 203,323 + HMPREF1078_RS08170 0.88 +1.4 203,323 + HMPREF1078_RS08170 0.88 +4.5 203,324 - HMPREF1078_RS08170 0.88 -1.2 203,324 - HMPREF1078_RS08170 0.88 +1.8 203,324 - HMPREF1078_RS08170 0.88 +0.1 203,324 - HMPREF1078_RS08170 0.88 +0.1 203,392 - -1.3 203,418 + -0.8 203,419 - +0.6 203,419 - -2.5 203,419 - +0.4 203,421 - +0.4 203,421 - -0.6 203,569 + HMPREF1078_RS08175 0.16 -2.0 203,569 + HMPREF1078_RS08175 0.16 +0.6 203,572 + HMPREF1078_RS08175 0.16 +0.5 203,573 - HMPREF1078_RS08175 0.16 -2.2 203,683 + HMPREF1078_RS08175 0.30 -0.8 203,709 + HMPREF1078_RS08175 0.33 +0.7 203,709 + HMPREF1078_RS08175 0.33 +0.3 203,709 + HMPREF1078_RS08175 0.33 -1.2 203,755 - HMPREF1078_RS08175 0.39 -0.9 203,828 - HMPREF1078_RS08175 0.48 +0.6 203,833 - HMPREF1078_RS08175 0.49 -1.8 203,856 + HMPREF1078_RS08175 0.51 -3.3 203,867 - HMPREF1078_RS08175 0.53 -1.7 203,867 - HMPREF1078_RS08175 0.53 +0.4 203,867 - HMPREF1078_RS08175 0.53 -3.3 203,868 + HMPREF1078_RS08175 0.53 -3.5 203,869 - HMPREF1078_RS08175 0.53 +0.9 203,869 - HMPREF1078_RS08175 0.53 -1.2 203,869 - HMPREF1078_RS08175 0.53 +0.7 204,097 - HMPREF1078_RS08175 0.81 +0.7 204,097 - HMPREF1078_RS08175 0.81 -2.2 204,097 - HMPREF1078_RS08175 0.81 +0.7 204,097 - HMPREF1078_RS08175 0.81 -1.3 204,125 - HMPREF1078_RS08175 0.85 -1.3 204,133 - HMPREF1078_RS08175 0.86 -1.2 204,162 - HMPREF1078_RS08175 0.89 +0.1 204,162 - HMPREF1078_RS08175 0.89 +0.8 204,234 + +2.0 204,235 - +0.3 204,257 + -0.7 204,258 - +0.1 204,278 + -0.2 204,279 - +0.2 204,279 - +1.4 204,316 - -1.6 204,325 - +0.9 204,328 + +0.1 204,329 - -0.5 204,379 + -2.5 204,386 - +0.5 204,386 - -0.2 204,389 + +3.0 204,432 + -1.5 204,432 + -1.3 204,432 + -1.3 204,434 + -1.4 204,434 + -2.9 204,434 + +1.4 204,435 - +1.1 204,435 - -1.3 204,435 - +1.3 204,464 - +1.2 204,528 + HMPREF1078_RS08180 0.10 -1.9 204,696 + HMPREF1078_RS08180 0.17 +0.9 204,697 - HMPREF1078_RS08180 0.17 -1.5 204,708 + HMPREF1078_RS08180 0.17 +2.7 204,708 + HMPREF1078_RS08180 0.17 -1.2 204,709 - HMPREF1078_RS08180 0.17 +0.6 204,709 - HMPREF1078_RS08180 0.17 -4.0 204,775 - HMPREF1078_RS08180 0.20 +0.4 204,796 - HMPREF1078_RS08180 0.21 -2.8 204,819 + HMPREF1078_RS08180 0.22 -1.1 204,819 + HMPREF1078_RS08180 0.22 +0.1 204,820 - HMPREF1078_RS08180 0.22 -2.3 204,820 - HMPREF1078_RS08180 0.22 -0.9 204,852 + HMPREF1078_RS08180 0.23 -4.1 204,852 + HMPREF1078_RS08180 0.23 -2.3 204,897 + HMPREF1078_RS08180 0.25 +0.1 204,898 - HMPREF1078_RS08180 0.25 -0.3 204,907 + HMPREF1078_RS08180 0.25 -0.6 204,976 + HMPREF1078_RS08180 0.28 -0.6 205,070 - HMPREF1078_RS08180 0.31 -2.2 205,118 - HMPREF1078_RS08180 0.33 +1.1 205,142 + HMPREF1078_RS08180 0.34 +1.1 205,217 + HMPREF1078_RS08180 0.37 -0.9
Or see this region's nucleotide sequence