Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06105 and HMPREF1078_RS06110 are separated by 149 nucleotides HMPREF1078_RS06110 and HMPREF1078_RS06115 are separated by 5 nucleotides
HMPREF1078_RS06105: HMPREF1078_RS06105 - alpha-L-fucosidase, at 567,876 to 570,017
_RS06105
HMPREF1078_RS06110: HMPREF1078_RS06110 - beta-galactosidase, at 570,167 to 572,509
_RS06110
HMPREF1078_RS06115: HMPREF1078_RS06115 - hypothetical protein, at 572,515 to 574,800
_RS06115
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 569.353 kb on + strand, within HMPREF1078_RS06105 at 569.553 kb on + strand, within HMPREF1078_RS06105 at 569.556 kb on + strand, within HMPREF1078_RS06105 at 569.670 kb on - strand, within HMPREF1078_RS06105 at 569.670 kb on - strand, within HMPREF1078_RS06105 at 569.943 kb on + strand at 570.035 kb on + strand at 570.035 kb on + strand at 570.035 kb on + strand at 570.038 kb on - strand at 570.046 kb on + strand at 570.051 kb on + strand at 570.061 kb on + strand at 570.062 kb on - strand at 570.062 kb on - strand at 570.091 kb on + strand at 570.091 kb on + strand at 570.091 kb on + strand at 570.092 kb on - strand at 570.092 kb on - strand at 570.168 kb on + strand at 570.195 kb on + strand at 570.195 kb on + strand at 570.196 kb on - strand at 570.203 kb on - strand at 570.203 kb on - strand at 570.307 kb on - strand at 570.334 kb on - strand at 570.337 kb on + strand at 570.338 kb on - strand at 570.338 kb on - strand at 570.405 kb on + strand, within HMPREF1078_RS06110 at 570.406 kb on - strand, within HMPREF1078_RS06110 at 570.717 kb on - strand, within HMPREF1078_RS06110 at 570.772 kb on + strand, within HMPREF1078_RS06110 at 571.408 kb on - strand, within HMPREF1078_RS06110 at 571.476 kb on + strand, within HMPREF1078_RS06110 at 571.476 kb on + strand, within HMPREF1078_RS06110 at 571.606 kb on - strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.621 kb on + strand, within HMPREF1078_RS06110 at 571.622 kb on - strand, within HMPREF1078_RS06110 at 571.783 kb on + strand, within HMPREF1078_RS06110 at 571.843 kb on + strand, within HMPREF1078_RS06110 at 571.843 kb on + strand, within HMPREF1078_RS06110 at 571.918 kb on + strand, within HMPREF1078_RS06110 at 571.920 kb on + strand, within HMPREF1078_RS06110 at 571.920 kb on + strand, within HMPREF1078_RS06110 at 571.921 kb on - strand, within HMPREF1078_RS06110 at 571.921 kb on - strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.938 kb on + strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.939 kb on - strand, within HMPREF1078_RS06110 at 571.964 kb on + strand, within HMPREF1078_RS06110 at 571.964 kb on + strand, within HMPREF1078_RS06110 at 571.965 kb on - strand, within HMPREF1078_RS06110 at 571.975 kb on + strand, within HMPREF1078_RS06110 at 571.975 kb on + strand, within HMPREF1078_RS06110 at 572.163 kb on + strand, within HMPREF1078_RS06110 at 572.163 kb on + strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.164 kb on - strand, within HMPREF1078_RS06110 at 572.265 kb on + strand, within HMPREF1078_RS06110 at 572.269 kb on + strand, within HMPREF1078_RS06110 at 572.269 kb on + strand, within HMPREF1078_RS06110 at 572.270 kb on - strand, within HMPREF1078_RS06110 at 572.335 kb on + strand at 572.343 kb on + strand at 572.344 kb on - strand at 572.344 kb on - strand at 572.498 kb on + strand at 572.516 kb on + strand at 572.522 kb on + strand at 572.523 kb on - strand at 572.528 kb on - strand at 572.870 kb on + strand, within HMPREF1078_RS06115 at 572.870 kb on + strand, within HMPREF1078_RS06115 at 573.016 kb on - strand, within HMPREF1078_RS06115 at 573.018 kb on - strand, within HMPREF1078_RS06115 at 573.055 kb on + strand, within HMPREF1078_RS06115 at 573.211 kb on + strand, within HMPREF1078_RS06115 at 573.332 kb on + strand, within HMPREF1078_RS06115 at 573.332 kb on + strand, within HMPREF1078_RS06115 at 573.409 kb on + strand, within HMPREF1078_RS06115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 569,353 + HMPREF1078_RS06105 0.69 -1.4 569,553 + HMPREF1078_RS06105 0.78 -0.3 569,556 + HMPREF1078_RS06105 0.78 +2.0 569,670 - HMPREF1078_RS06105 0.84 -0.5 569,670 - HMPREF1078_RS06105 0.84 -2.5 569,943 + -3.2 570,035 + +1.2 570,035 + +0.7 570,035 + +1.7 570,038 - +0.6 570,046 + -2.0 570,051 + -3.1 570,061 + +0.7 570,062 - +2.2 570,062 - -0.9 570,091 + -1.1 570,091 + -1.5 570,091 + +0.8 570,092 - -1.2 570,092 - -0.4 570,168 + -1.4 570,195 + -1.3 570,195 + +2.3 570,196 - +0.8 570,203 - -0.7 570,203 - +0.8 570,307 - +2.6 570,334 - -0.2 570,337 + +2.4 570,338 - +2.5 570,338 - -1.5 570,405 + HMPREF1078_RS06110 0.10 +0.1 570,406 - HMPREF1078_RS06110 0.10 -0.4 570,717 - HMPREF1078_RS06110 0.23 -2.5 570,772 + HMPREF1078_RS06110 0.26 +1.3 571,408 - HMPREF1078_RS06110 0.53 -1.7 571,476 + HMPREF1078_RS06110 0.56 -1.1 571,476 + HMPREF1078_RS06110 0.56 -0.8 571,606 - HMPREF1078_RS06110 0.61 -2.1 571,621 + HMPREF1078_RS06110 0.62 -4.8 571,621 + HMPREF1078_RS06110 0.62 +0.2 571,621 + HMPREF1078_RS06110 0.62 -0.3 571,622 - HMPREF1078_RS06110 0.62 +0.9 571,783 + HMPREF1078_RS06110 0.69 -3.4 571,843 + HMPREF1078_RS06110 0.72 +1.3 571,843 + HMPREF1078_RS06110 0.72 -0.5 571,918 + HMPREF1078_RS06110 0.75 -0.3 571,920 + HMPREF1078_RS06110 0.75 -2.8 571,920 + HMPREF1078_RS06110 0.75 -1.6 571,921 - HMPREF1078_RS06110 0.75 -0.8 571,921 - HMPREF1078_RS06110 0.75 +2.0 571,938 + HMPREF1078_RS06110 0.76 +1.3 571,938 + HMPREF1078_RS06110 0.76 -1.0 571,938 + HMPREF1078_RS06110 0.76 -0.0 571,938 + HMPREF1078_RS06110 0.76 -0.8 571,939 - HMPREF1078_RS06110 0.76 +0.6 571,939 - HMPREF1078_RS06110 0.76 +2.0 571,939 - HMPREF1078_RS06110 0.76 -1.2 571,939 - HMPREF1078_RS06110 0.76 -3.0 571,964 + HMPREF1078_RS06110 0.77 +1.5 571,964 + HMPREF1078_RS06110 0.77 -1.8 571,965 - HMPREF1078_RS06110 0.77 -0.5 571,975 + HMPREF1078_RS06110 0.77 +2.0 571,975 + HMPREF1078_RS06110 0.77 -1.6 572,163 + HMPREF1078_RS06110 0.85 +1.1 572,163 + HMPREF1078_RS06110 0.85 -2.2 572,164 - HMPREF1078_RS06110 0.85 +0.4 572,164 - HMPREF1078_RS06110 0.85 -0.5 572,164 - HMPREF1078_RS06110 0.85 +2.6 572,265 + HMPREF1078_RS06110 0.90 -0.6 572,269 + HMPREF1078_RS06110 0.90 -2.8 572,269 + HMPREF1078_RS06110 0.90 -0.7 572,270 - HMPREF1078_RS06110 0.90 +2.2 572,335 + +0.3 572,343 + +1.5 572,344 - -2.1 572,344 - +2.2 572,498 + -2.6 572,516 + +0.9 572,522 + -0.3 572,523 - -0.8 572,528 - +0.9 572,870 + HMPREF1078_RS06115 0.16 +0.6 572,870 + HMPREF1078_RS06115 0.16 -2.3 573,016 - HMPREF1078_RS06115 0.22 +0.2 573,018 - HMPREF1078_RS06115 0.22 +2.2 573,055 + HMPREF1078_RS06115 0.24 +2.5 573,211 + HMPREF1078_RS06115 0.30 -0.8 573,332 + HMPREF1078_RS06115 0.36 +0.8 573,332 + HMPREF1078_RS06115 0.36 -0.2 573,409 + HMPREF1078_RS06115 0.39 +0.7
Or see this region's nucleotide sequence