Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00820 and HMPREF1078_RS00825 are separated by 301 nucleotides HMPREF1078_RS00825 and HMPREF1078_RS00830 overlap by 23 nucleotides HMPREF1078_RS00830 and HMPREF1078_RS00835 are separated by 12 nucleotides
HMPREF1078_RS00820: HMPREF1078_RS00820 - phosphoglucosamine mutase, at 194,481 to 195,869
_RS00820
HMPREF1078_RS00825: HMPREF1078_RS00825 - gliding motility-associated C-terminal domain-containing protein, at 196,171 to 197,520
_RS00825
HMPREF1078_RS00830: HMPREF1078_RS00830 - lytic transglycosylase domain-containing protein, at 197,498 to 198,475
_RS00830
HMPREF1078_RS00835: HMPREF1078_RS00835 - excinuclease ABC subunit UvrA, at 198,488 to 201,340
_RS00835
Position (kb) 196
197
198 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 195.857 kb on + strand at 195.857 kb on + strand at 195.864 kb on - strand at 195.864 kb on - strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.901 kb on - strand at 195.901 kb on - strand at 195.944 kb on + strand at 196.025 kb on + strand at 196.052 kb on - strand at 196.094 kb on + strand at 196.103 kb on - strand at 196.114 kb on + strand at 196.115 kb on - strand at 196.115 kb on - strand at 196.140 kb on - strand at 196.150 kb on + strand at 196.156 kb on - strand at 196.156 kb on - strand at 196.156 kb on - strand at 196.156 kb on - strand at 196.159 kb on + strand at 196.164 kb on + strand at 196.164 kb on + strand at 196.165 kb on - strand at 196.168 kb on + strand at 196.168 kb on + strand at 196.168 kb on + strand at 196.168 kb on + strand at 196.168 kb on + strand at 196.168 kb on + strand at 196.169 kb on - strand at 196.169 kb on - strand at 196.169 kb on - strand at 196.170 kb on + strand at 196.175 kb on + strand at 196.251 kb on + strand at 196.252 kb on - strand at 196.252 kb on - strand at 196.279 kb on + strand at 196.279 kb on + strand at 196.279 kb on + strand at 196.280 kb on - strand at 196.280 kb on - strand at 196.307 kb on + strand, within HMPREF1078_RS00825 at 196.316 kb on - strand, within HMPREF1078_RS00825 at 196.324 kb on + strand, within HMPREF1078_RS00825 at 196.324 kb on + strand, within HMPREF1078_RS00825 at 196.324 kb on + strand, within HMPREF1078_RS00825 at 196.347 kb on + strand, within HMPREF1078_RS00825 at 196.348 kb on - strand, within HMPREF1078_RS00825 at 196.353 kb on + strand, within HMPREF1078_RS00825 at 196.353 kb on + strand, within HMPREF1078_RS00825 at 196.354 kb on - strand, within HMPREF1078_RS00825 at 196.354 kb on - strand, within HMPREF1078_RS00825 at 196.354 kb on - strand, within HMPREF1078_RS00825 at 196.354 kb on - strand, within HMPREF1078_RS00825 at 196.366 kb on - strand, within HMPREF1078_RS00825 at 196.368 kb on + strand, within HMPREF1078_RS00825 at 196.369 kb on - strand, within HMPREF1078_RS00825 at 196.388 kb on - strand, within HMPREF1078_RS00825 at 196.389 kb on + strand, within HMPREF1078_RS00825 at 196.390 kb on - strand, within HMPREF1078_RS00825 at 196.390 kb on - strand, within HMPREF1078_RS00825 at 196.458 kb on + strand, within HMPREF1078_RS00825 at 196.460 kb on + strand, within HMPREF1078_RS00825 at 196.480 kb on + strand, within HMPREF1078_RS00825 at 196.516 kb on + strand, within HMPREF1078_RS00825 at 196.516 kb on + strand, within HMPREF1078_RS00825 at 196.516 kb on + strand, within HMPREF1078_RS00825 at 196.516 kb on + strand, within HMPREF1078_RS00825 at 196.520 kb on + strand, within HMPREF1078_RS00825 at 196.520 kb on + strand, within HMPREF1078_RS00825 at 196.520 kb on + strand, within HMPREF1078_RS00825 at 196.521 kb on - strand, within HMPREF1078_RS00825 at 196.521 kb on - strand, within HMPREF1078_RS00825 at 196.521 kb on - strand, within HMPREF1078_RS00825 at 196.535 kb on - strand, within HMPREF1078_RS00825 at 196.535 kb on - strand, within HMPREF1078_RS00825 at 196.536 kb on + strand, within HMPREF1078_RS00825 at 196.536 kb on + strand, within HMPREF1078_RS00825 at 196.539 kb on + strand, within HMPREF1078_RS00825 at 196.539 kb on + strand, within HMPREF1078_RS00825 at 196.543 kb on + strand, within HMPREF1078_RS00825 at 196.544 kb on - strand, within HMPREF1078_RS00825 at 196.551 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.627 kb on + strand, within HMPREF1078_RS00825 at 196.628 kb on - strand, within HMPREF1078_RS00825 at 196.630 kb on + strand, within HMPREF1078_RS00825 at 196.630 kb on + strand, within HMPREF1078_RS00825 at 196.631 kb on - strand, within HMPREF1078_RS00825 at 196.633 kb on + strand, within HMPREF1078_RS00825 at 196.633 kb on + strand, within HMPREF1078_RS00825 at 196.634 kb on - strand, within HMPREF1078_RS00825 at 196.717 kb on + strand, within HMPREF1078_RS00825 at 196.717 kb on + strand, within HMPREF1078_RS00825 at 196.718 kb on - strand, within HMPREF1078_RS00825 at 196.762 kb on + strand, within HMPREF1078_RS00825 at 196.776 kb on - strand, within HMPREF1078_RS00825 at 196.876 kb on - strand, within HMPREF1078_RS00825 at 196.879 kb on + strand, within HMPREF1078_RS00825 at 196.879 kb on + strand, within HMPREF1078_RS00825 at 196.880 kb on - strand, within HMPREF1078_RS00825 at 196.880 kb on - strand, within HMPREF1078_RS00825 at 196.880 kb on - strand, within HMPREF1078_RS00825 at 196.922 kb on + strand, within HMPREF1078_RS00825 at 196.923 kb on - strand, within HMPREF1078_RS00825 at 196.923 kb on - strand, within HMPREF1078_RS00825 at 196.941 kb on + strand, within HMPREF1078_RS00825 at 196.942 kb on - strand, within HMPREF1078_RS00825 at 196.963 kb on + strand, within HMPREF1078_RS00825 at 196.963 kb on + strand, within HMPREF1078_RS00825 at 196.965 kb on + strand, within HMPREF1078_RS00825 at 196.966 kb on - strand, within HMPREF1078_RS00825 at 197.000 kb on - strand, within HMPREF1078_RS00825 at 197.027 kb on - strand, within HMPREF1078_RS00825 at 197.028 kb on + strand, within HMPREF1078_RS00825 at 197.028 kb on + strand, within HMPREF1078_RS00825 at 197.039 kb on + strand, within HMPREF1078_RS00825 at 197.040 kb on - strand, within HMPREF1078_RS00825 at 197.043 kb on + strand, within HMPREF1078_RS00825 at 197.086 kb on + strand, within HMPREF1078_RS00825 at 197.089 kb on - strand, within HMPREF1078_RS00825 at 197.107 kb on + strand, within HMPREF1078_RS00825 at 197.109 kb on + strand, within HMPREF1078_RS00825 at 197.109 kb on + strand, within HMPREF1078_RS00825 at 197.109 kb on + strand, within HMPREF1078_RS00825 at 197.110 kb on - strand, within HMPREF1078_RS00825 at 197.110 kb on - strand, within HMPREF1078_RS00825 at 197.132 kb on - strand, within HMPREF1078_RS00825 at 197.132 kb on - strand, within HMPREF1078_RS00825 at 197.248 kb on - strand, within HMPREF1078_RS00825 at 197.259 kb on + strand, within HMPREF1078_RS00825 at 197.270 kb on - strand, within HMPREF1078_RS00825 at 197.304 kb on + strand, within HMPREF1078_RS00825 at 197.319 kb on + strand, within HMPREF1078_RS00825 at 197.342 kb on - strand, within HMPREF1078_RS00825 at 197.342 kb on - strand, within HMPREF1078_RS00825 at 197.342 kb on - strand, within HMPREF1078_RS00825 at 197.349 kb on + strand, within HMPREF1078_RS00825 at 197.349 kb on + strand, within HMPREF1078_RS00825 at 197.393 kb on - strand at 197.424 kb on - strand at 197.448 kb on + strand at 197.449 kb on - strand at 197.457 kb on + strand at 197.472 kb on - strand at 197.472 kb on - strand at 197.475 kb on + strand at 197.518 kb on + strand at 197.518 kb on + strand at 197.524 kb on + strand at 197.524 kb on + strand at 197.525 kb on - strand at 197.525 kb on - strand at 197.526 kb on + strand at 197.527 kb on - strand at 197.681 kb on - strand, within HMPREF1078_RS00830 at 197.699 kb on - strand, within HMPREF1078_RS00830 at 197.701 kb on + strand, within HMPREF1078_RS00830 at 197.701 kb on + strand, within HMPREF1078_RS00830 at 197.756 kb on - strand, within HMPREF1078_RS00830 at 197.756 kb on - strand, within HMPREF1078_RS00830 at 197.843 kb on + strand, within HMPREF1078_RS00830 at 197.843 kb on + strand, within HMPREF1078_RS00830 at 197.843 kb on + strand, within HMPREF1078_RS00830 at 197.901 kb on + strand, within HMPREF1078_RS00830 at 197.901 kb on + strand, within HMPREF1078_RS00830 at 197.939 kb on + strand, within HMPREF1078_RS00830 at 197.953 kb on - strand, within HMPREF1078_RS00830 at 197.959 kb on + strand, within HMPREF1078_RS00830 at 197.960 kb on - strand, within HMPREF1078_RS00830 at 197.960 kb on - strand, within HMPREF1078_RS00830 at 198.065 kb on + strand, within HMPREF1078_RS00830 at 198.066 kb on + strand, within HMPREF1078_RS00830 at 198.086 kb on - strand, within HMPREF1078_RS00830 at 198.158 kb on + strand, within HMPREF1078_RS00830 at 198.158 kb on + strand, within HMPREF1078_RS00830 at 198.159 kb on - strand, within HMPREF1078_RS00830 at 198.162 kb on + strand, within HMPREF1078_RS00830 at 198.163 kb on - strand, within HMPREF1078_RS00830 at 198.169 kb on + strand, within HMPREF1078_RS00830 at 198.169 kb on + strand, within HMPREF1078_RS00830 at 198.169 kb on + strand, within HMPREF1078_RS00830 at 198.170 kb on - strand, within HMPREF1078_RS00830 at 198.179 kb on - strand, within HMPREF1078_RS00830 at 198.209 kb on + strand, within HMPREF1078_RS00830 at 198.323 kb on + strand, within HMPREF1078_RS00830 at 198.323 kb on + strand, within HMPREF1078_RS00830 at 198.324 kb on - strand, within HMPREF1078_RS00830 at 198.389 kb on + strand at 198.391 kb on + strand at 198.391 kb on + strand at 198.391 kb on + strand at 198.392 kb on - strand at 198.392 kb on - strand at 198.392 kb on - strand at 198.418 kb on + strand at 198.418 kb on + strand at 198.419 kb on - strand at 198.419 kb on - strand at 198.419 kb on - strand at 198.419 kb on - strand at 198.419 kb on - strand at 198.422 kb on + strand at 198.422 kb on + strand at 198.422 kb on + strand at 198.422 kb on + strand at 198.422 kb on + strand at 198.422 kb on + strand at 198.423 kb on - strand at 198.423 kb on - strand at 198.423 kb on - strand at 198.423 kb on - strand at 198.423 kb on - strand at 198.443 kb on + strand at 198.443 kb on + strand at 198.443 kb on + strand at 198.444 kb on - strand at 198.444 kb on - strand at 198.444 kb on - strand at 198.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 195,857 + -2.8 195,857 + -3.7 195,864 - -0.2 195,864 - -1.8 195,900 + +1.2 195,900 + -2.9 195,900 + -0.3 195,901 - -1.5 195,901 - -0.1 195,944 + +0.4 196,025 + +0.0 196,052 - +0.7 196,094 + -0.6 196,103 - +1.0 196,114 + +1.1 196,115 - -2.6 196,115 - -1.9 196,140 - -2.8 196,150 + -2.1 196,156 - -3.1 196,156 - -2.8 196,156 - -2.2 196,156 - -1.2 196,159 + -1.6 196,164 + +0.3 196,164 + +1.2 196,165 - -0.8 196,168 + -1.3 196,168 + -3.7 196,168 + -2.3 196,168 + -2.1 196,168 + -3.3 196,168 + -0.3 196,169 - -3.0 196,169 - -2.1 196,169 - -3.6 196,170 + -0.8 196,175 + -2.0 196,251 + -1.8 196,252 - -1.9 196,252 - -1.3 196,279 + -2.6 196,279 + -1.7 196,279 + -1.7 196,280 - -2.4 196,280 - -4.2 196,307 + HMPREF1078_RS00825 0.10 -3.1 196,316 - HMPREF1078_RS00825 0.11 -2.5 196,324 + HMPREF1078_RS00825 0.11 -3.3 196,324 + HMPREF1078_RS00825 0.11 -2.7 196,324 + HMPREF1078_RS00825 0.11 -3.3 196,347 + HMPREF1078_RS00825 0.13 -2.3 196,348 - HMPREF1078_RS00825 0.13 -3.2 196,353 + HMPREF1078_RS00825 0.13 -2.7 196,353 + HMPREF1078_RS00825 0.13 -1.8 196,354 - HMPREF1078_RS00825 0.14 -2.6 196,354 - HMPREF1078_RS00825 0.14 -1.5 196,354 - HMPREF1078_RS00825 0.14 -3.1 196,354 - HMPREF1078_RS00825 0.14 -4.3 196,366 - HMPREF1078_RS00825 0.14 -2.5 196,368 + HMPREF1078_RS00825 0.15 -1.6 196,369 - HMPREF1078_RS00825 0.15 -2.1 196,388 - HMPREF1078_RS00825 0.16 -3.8 196,389 + HMPREF1078_RS00825 0.16 -3.1 196,390 - HMPREF1078_RS00825 0.16 -1.8 196,390 - HMPREF1078_RS00825 0.16 -2.1 196,458 + HMPREF1078_RS00825 0.21 -1.6 196,460 + HMPREF1078_RS00825 0.21 -2.5 196,480 + HMPREF1078_RS00825 0.23 -4.8 196,516 + HMPREF1078_RS00825 0.26 -4.2 196,516 + HMPREF1078_RS00825 0.26 -1.5 196,516 + HMPREF1078_RS00825 0.26 -2.9 196,516 + HMPREF1078_RS00825 0.26 -1.2 196,520 + HMPREF1078_RS00825 0.26 -3.7 196,520 + HMPREF1078_RS00825 0.26 -0.6 196,520 + HMPREF1078_RS00825 0.26 -3.6 196,521 - HMPREF1078_RS00825 0.26 -3.4 196,521 - HMPREF1078_RS00825 0.26 -2.8 196,521 - HMPREF1078_RS00825 0.26 -4.0 196,535 - HMPREF1078_RS00825 0.27 -1.2 196,535 - HMPREF1078_RS00825 0.27 -3.0 196,536 + HMPREF1078_RS00825 0.27 -4.3 196,536 + HMPREF1078_RS00825 0.27 -2.1 196,539 + HMPREF1078_RS00825 0.27 -2.6 196,539 + HMPREF1078_RS00825 0.27 -2.3 196,543 + HMPREF1078_RS00825 0.28 -5.2 196,544 - HMPREF1078_RS00825 0.28 -1.2 196,551 + HMPREF1078_RS00825 0.28 -1.9 196,627 + HMPREF1078_RS00825 0.34 -4.6 196,627 + HMPREF1078_RS00825 0.34 -1.1 196,627 + HMPREF1078_RS00825 0.34 -2.7 196,627 + HMPREF1078_RS00825 0.34 -5.1 196,627 + HMPREF1078_RS00825 0.34 -1.8 196,627 + HMPREF1078_RS00825 0.34 -3.7 196,627 + HMPREF1078_RS00825 0.34 -3.2 196,627 + HMPREF1078_RS00825 0.34 -3.1 196,628 - HMPREF1078_RS00825 0.34 -3.3 196,630 + HMPREF1078_RS00825 0.34 -4.3 196,630 + HMPREF1078_RS00825 0.34 -3.2 196,631 - HMPREF1078_RS00825 0.34 -2.3 196,633 + HMPREF1078_RS00825 0.34 -0.1 196,633 + HMPREF1078_RS00825 0.34 -0.8 196,634 - HMPREF1078_RS00825 0.34 -3.5 196,717 + HMPREF1078_RS00825 0.40 -0.9 196,717 + HMPREF1078_RS00825 0.40 -4.3 196,718 - HMPREF1078_RS00825 0.41 -3.5 196,762 + HMPREF1078_RS00825 0.44 -3.0 196,776 - HMPREF1078_RS00825 0.45 -0.6 196,876 - HMPREF1078_RS00825 0.52 -2.5 196,879 + HMPREF1078_RS00825 0.52 -0.3 196,879 + HMPREF1078_RS00825 0.52 -2.3 196,880 - HMPREF1078_RS00825 0.53 -3.2 196,880 - HMPREF1078_RS00825 0.53 -3.2 196,880 - HMPREF1078_RS00825 0.53 -3.8 196,922 + HMPREF1078_RS00825 0.56 +0.2 196,923 - HMPREF1078_RS00825 0.56 -2.3 196,923 - HMPREF1078_RS00825 0.56 -2.6 196,941 + HMPREF1078_RS00825 0.57 -2.4 196,942 - HMPREF1078_RS00825 0.57 -2.1 196,963 + HMPREF1078_RS00825 0.59 -3.7 196,963 + HMPREF1078_RS00825 0.59 -2.6 196,965 + HMPREF1078_RS00825 0.59 -3.1 196,966 - HMPREF1078_RS00825 0.59 -1.9 197,000 - HMPREF1078_RS00825 0.61 -2.5 197,027 - HMPREF1078_RS00825 0.63 -2.1 197,028 + HMPREF1078_RS00825 0.63 -4.0 197,028 + HMPREF1078_RS00825 0.63 -0.6 197,039 + HMPREF1078_RS00825 0.64 -2.1 197,040 - HMPREF1078_RS00825 0.64 -1.6 197,043 + HMPREF1078_RS00825 0.65 -4.5 197,086 + HMPREF1078_RS00825 0.68 -2.0 197,089 - HMPREF1078_RS00825 0.68 -2.5 197,107 + HMPREF1078_RS00825 0.69 -2.2 197,109 + HMPREF1078_RS00825 0.69 -2.1 197,109 + HMPREF1078_RS00825 0.69 -2.2 197,109 + HMPREF1078_RS00825 0.69 -3.1 197,110 - HMPREF1078_RS00825 0.70 -4.0 197,110 - HMPREF1078_RS00825 0.70 -1.8 197,132 - HMPREF1078_RS00825 0.71 -3.0 197,132 - HMPREF1078_RS00825 0.71 -2.0 197,248 - HMPREF1078_RS00825 0.80 -3.5 197,259 + HMPREF1078_RS00825 0.81 -1.8 197,270 - HMPREF1078_RS00825 0.81 -2.6 197,304 + HMPREF1078_RS00825 0.84 -3.1 197,319 + HMPREF1078_RS00825 0.85 -4.6 197,342 - HMPREF1078_RS00825 0.87 -2.0 197,342 - HMPREF1078_RS00825 0.87 -1.1 197,342 - HMPREF1078_RS00825 0.87 -3.0 197,349 + HMPREF1078_RS00825 0.87 -2.4 197,349 + HMPREF1078_RS00825 0.87 -4.1 197,393 - -1.1 197,424 - -3.4 197,448 + -2.5 197,449 - -3.1 197,457 + -2.5 197,472 - -2.3 197,472 - -1.8 197,475 + -1.8 197,518 + +1.0 197,518 + +2.0 197,524 + +0.2 197,524 + -0.1 197,525 - -0.8 197,525 - -1.9 197,526 + +0.9 197,527 - -0.2 197,681 - HMPREF1078_RS00830 0.19 -0.9 197,699 - HMPREF1078_RS00830 0.21 -0.6 197,701 + HMPREF1078_RS00830 0.21 +0.2 197,701 + HMPREF1078_RS00830 0.21 -1.2 197,756 - HMPREF1078_RS00830 0.26 -1.6 197,756 - HMPREF1078_RS00830 0.26 -1.6 197,843 + HMPREF1078_RS00830 0.35 -0.0 197,843 + HMPREF1078_RS00830 0.35 -0.4 197,843 + HMPREF1078_RS00830 0.35 -0.1 197,901 + HMPREF1078_RS00830 0.41 -1.5 197,901 + HMPREF1078_RS00830 0.41 +0.7 197,939 + HMPREF1078_RS00830 0.45 -1.8 197,953 - HMPREF1078_RS00830 0.47 -1.8 197,959 + HMPREF1078_RS00830 0.47 -0.5 197,960 - HMPREF1078_RS00830 0.47 -1.2 197,960 - HMPREF1078_RS00830 0.47 -0.6 198,065 + HMPREF1078_RS00830 0.58 -2.7 198,066 + HMPREF1078_RS00830 0.58 -0.4 198,086 - HMPREF1078_RS00830 0.60 -0.1 198,158 + HMPREF1078_RS00830 0.67 -0.6 198,158 + HMPREF1078_RS00830 0.67 +2.5 198,159 - HMPREF1078_RS00830 0.68 -1.5 198,162 + HMPREF1078_RS00830 0.68 -1.1 198,163 - HMPREF1078_RS00830 0.68 -2.5 198,169 + HMPREF1078_RS00830 0.69 +2.2 198,169 + HMPREF1078_RS00830 0.69 -0.2 198,169 + HMPREF1078_RS00830 0.69 -0.8 198,170 - HMPREF1078_RS00830 0.69 -1.1 198,179 - HMPREF1078_RS00830 0.70 +0.2 198,209 + HMPREF1078_RS00830 0.73 -3.0 198,323 + HMPREF1078_RS00830 0.84 -1.8 198,323 + HMPREF1078_RS00830 0.84 +0.9 198,324 - HMPREF1078_RS00830 0.84 +2.2 198,389 + -1.2 198,391 + +0.9 198,391 + -2.5 198,391 + -1.7 198,392 - -1.1 198,392 - -1.7 198,392 - -0.3 198,418 + -3.5 198,418 + +0.6 198,419 - -2.7 198,419 - -1.2 198,419 - -1.8 198,419 - -2.6 198,419 - -2.1 198,422 + -2.7 198,422 + +1.4 198,422 + +0.7 198,422 + +1.3 198,422 + -1.8 198,422 + +0.5 198,423 - -1.2 198,423 - -3.1 198,423 - -2.6 198,423 - -2.8 198,423 - -1.1 198,443 + +0.0 198,443 + +0.7 198,443 + -0.3 198,444 - -0.3 198,444 - -3.7 198,444 - -1.6 198,500 - +0.1
Or see this region's nucleotide sequence