Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04825 and HMPREF1078_RS04830 are separated by 1 nucleotides HMPREF1078_RS04830 and HMPREF1078_RS04835 are separated by 9 nucleotides HMPREF1078_RS04835 and HMPREF1078_RS04840 overlap by 12 nucleotides
HMPREF1078_RS04825: HMPREF1078_RS04825 - decaprenyl-phosphate phosphoribosyltransferase, at 214,367 to 215,263
_RS04825
HMPREF1078_RS04830: HMPREF1078_RS04830 - HAD-IB family hydrolase, at 215,265 to 215,858
_RS04830
HMPREF1078_RS04835: HMPREF1078_RS04835 - DUF6080 domain-containing protein, at 215,868 to 217,148
_RS04835
HMPREF1078_RS04840: HMPREF1078_RS04840 - type IX secretion system sortase PorU, at 217,137 to 220,502
_RS04840
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.990 kb on + strand, within HMPREF1078_RS04825 at 214.991 kb on - strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.048 kb on + strand, within HMPREF1078_RS04825 at 215.049 kb on - strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.052 kb on + strand, within HMPREF1078_RS04825 at 215.053 kb on - strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.057 kb on + strand, within HMPREF1078_RS04825 at 215.097 kb on - strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.102 kb on + strand, within HMPREF1078_RS04825 at 215.103 kb on - strand, within HMPREF1078_RS04825 at 215.196 kb on + strand at 215.255 kb on - strand at 215.378 kb on + strand, within HMPREF1078_RS04830 at 215.511 kb on - strand, within HMPREF1078_RS04830 at 215.669 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.779 kb on + strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.780 kb on - strand, within HMPREF1078_RS04830 at 215.838 kb on - strand at 215.857 kb on - strand at 215.862 kb on + strand at 215.862 kb on + strand at 215.863 kb on - strand at 215.864 kb on + strand at 215.864 kb on + strand at 215.867 kb on + strand at 215.867 kb on + strand at 215.867 kb on + strand at 215.868 kb on - strand at 215.868 kb on - strand at 215.868 kb on - strand at 215.927 kb on + strand at 216.024 kb on - strand, within HMPREF1078_RS04835 at 216.040 kb on + strand, within HMPREF1078_RS04835 at 216.068 kb on - strand, within HMPREF1078_RS04835 at 216.082 kb on + strand, within HMPREF1078_RS04835 at 216.083 kb on - strand, within HMPREF1078_RS04835 at 216.238 kb on + strand, within HMPREF1078_RS04835 at 216.311 kb on - strand, within HMPREF1078_RS04835 at 216.352 kb on + strand, within HMPREF1078_RS04835 at 216.444 kb on - strand, within HMPREF1078_RS04835 at 216.444 kb on - strand, within HMPREF1078_RS04835 at 216.445 kb on + strand, within HMPREF1078_RS04835 at 216.445 kb on + strand, within HMPREF1078_RS04835 at 216.446 kb on - strand, within HMPREF1078_RS04835 at 216.536 kb on + strand, within HMPREF1078_RS04835 at 216.693 kb on + strand, within HMPREF1078_RS04835 at 216.756 kb on - strand, within HMPREF1078_RS04835 at 216.800 kb on - strand, within HMPREF1078_RS04835 at 216.904 kb on + strand, within HMPREF1078_RS04835 at 216.905 kb on - strand, within HMPREF1078_RS04835 at 216.905 kb on - strand, within HMPREF1078_RS04835 at 216.913 kb on + strand, within HMPREF1078_RS04835 at 216.913 kb on + strand, within HMPREF1078_RS04835 at 216.914 kb on - strand, within HMPREF1078_RS04835 at 216.914 kb on - strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.917 kb on + strand, within HMPREF1078_RS04835 at 216.918 kb on - strand, within HMPREF1078_RS04835 at 216.922 kb on - strand, within HMPREF1078_RS04835 at 216.925 kb on + strand, within HMPREF1078_RS04835 at 217.031 kb on - strand at 217.032 kb on + strand at 217.032 kb on + strand at 217.033 kb on - strand at 217.033 kb on - strand at 217.033 kb on - strand at 217.056 kb on + strand at 217.125 kb on - strand at 217.189 kb on + strand at 217.213 kb on - strand at 217.214 kb on + strand at 217.214 kb on + strand at 217.214 kb on + strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.215 kb on - strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.216 kb on + strand at 217.217 kb on - strand at 217.217 kb on - strand at 217.232 kb on + strand at 217.382 kb on + strand at 217.382 kb on + strand at 217.383 kb on - strand at 217.383 kb on - strand at 217.472 kb on + strand at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.494 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.527 kb on - strand, within HMPREF1078_RS04840 at 217.590 kb on + strand, within HMPREF1078_RS04840 at 217.590 kb on + strand, within HMPREF1078_RS04840 at 217.600 kb on + strand, within HMPREF1078_RS04840 at 217.604 kb on - strand, within HMPREF1078_RS04840 at 217.619 kb on - strand, within HMPREF1078_RS04840 at 217.655 kb on + strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.656 kb on - strand, within HMPREF1078_RS04840 at 217.697 kb on + strand, within HMPREF1078_RS04840 at 217.698 kb on - strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.771 kb on + strand, within HMPREF1078_RS04840 at 217.772 kb on - strand, within HMPREF1078_RS04840 at 217.772 kb on - strand, within HMPREF1078_RS04840 at 217.774 kb on - strand, within HMPREF1078_RS04840 at 217.799 kb on + strand, within HMPREF1078_RS04840 at 217.877 kb on + strand, within HMPREF1078_RS04840 at 217.889 kb on - strand, within HMPREF1078_RS04840 at 218.002 kb on + strand, within HMPREF1078_RS04840 at 218.034 kb on + strand, within HMPREF1078_RS04840 at 218.094 kb on + strand, within HMPREF1078_RS04840 at 218.095 kb on - strand, within HMPREF1078_RS04840 at 218.096 kb on + strand, within HMPREF1078_RS04840 at 218.096 kb on + strand, within HMPREF1078_RS04840 at 218.097 kb on - strand, within HMPREF1078_RS04840 at 218.113 kb on - strand, within HMPREF1078_RS04840 at 218.113 kb on - strand, within HMPREF1078_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 214,990 + HMPREF1078_RS04825 0.69 +0.8 214,990 + HMPREF1078_RS04825 0.69 +1.2 214,991 - HMPREF1078_RS04825 0.70 +2.3 215,048 + HMPREF1078_RS04825 0.76 +1.0 215,048 + HMPREF1078_RS04825 0.76 -1.5 215,049 - HMPREF1078_RS04825 0.76 +1.1 215,052 + HMPREF1078_RS04825 0.76 +0.2 215,052 + HMPREF1078_RS04825 0.76 +0.4 215,053 - HMPREF1078_RS04825 0.76 -0.9 215,057 + HMPREF1078_RS04825 0.77 -1.1 215,057 + HMPREF1078_RS04825 0.77 +1.8 215,097 - HMPREF1078_RS04825 0.81 -1.0 215,102 + HMPREF1078_RS04825 0.82 +2.0 215,102 + HMPREF1078_RS04825 0.82 -1.9 215,103 - HMPREF1078_RS04825 0.82 -1.7 215,196 + -2.5 215,255 - -1.5 215,378 + HMPREF1078_RS04830 0.19 +0.3 215,511 - HMPREF1078_RS04830 0.41 -0.1 215,669 + HMPREF1078_RS04830 0.68 -1.2 215,779 + HMPREF1078_RS04830 0.87 +1.1 215,779 + HMPREF1078_RS04830 0.87 -0.4 215,779 + HMPREF1078_RS04830 0.87 -1.9 215,779 + HMPREF1078_RS04830 0.87 +0.5 215,779 + HMPREF1078_RS04830 0.87 -0.5 215,780 - HMPREF1078_RS04830 0.87 +0.4 215,780 - HMPREF1078_RS04830 0.87 -1.3 215,780 - HMPREF1078_RS04830 0.87 +1.1 215,838 - -1.8 215,857 - +0.3 215,862 + -0.0 215,862 + +0.3 215,863 - +0.7 215,864 + +1.1 215,864 + -0.0 215,867 + +0.7 215,867 + +1.8 215,867 + +0.0 215,868 - +2.7 215,868 - -0.7 215,868 - -0.1 215,927 + +0.2 216,024 - HMPREF1078_RS04835 0.12 -0.6 216,040 + HMPREF1078_RS04835 0.13 -1.6 216,068 - HMPREF1078_RS04835 0.16 +2.4 216,082 + HMPREF1078_RS04835 0.17 -0.4 216,083 - HMPREF1078_RS04835 0.17 -2.5 216,238 + HMPREF1078_RS04835 0.29 -0.5 216,311 - HMPREF1078_RS04835 0.35 +0.4 216,352 + HMPREF1078_RS04835 0.38 -3.1 216,444 - HMPREF1078_RS04835 0.45 -0.9 216,444 - HMPREF1078_RS04835 0.45 -0.3 216,445 + HMPREF1078_RS04835 0.45 -0.1 216,445 + HMPREF1078_RS04835 0.45 -2.5 216,446 - HMPREF1078_RS04835 0.45 -3.2 216,536 + HMPREF1078_RS04835 0.52 -0.9 216,693 + HMPREF1078_RS04835 0.64 +1.3 216,756 - HMPREF1078_RS04835 0.69 -1.9 216,800 - HMPREF1078_RS04835 0.73 +1.3 216,904 + HMPREF1078_RS04835 0.81 +1.9 216,905 - HMPREF1078_RS04835 0.81 +0.8 216,905 - HMPREF1078_RS04835 0.81 -0.3 216,913 + HMPREF1078_RS04835 0.82 -1.4 216,913 + HMPREF1078_RS04835 0.82 +0.0 216,914 - HMPREF1078_RS04835 0.82 -2.3 216,914 - HMPREF1078_RS04835 0.82 -0.9 216,917 + HMPREF1078_RS04835 0.82 -1.3 216,917 + HMPREF1078_RS04835 0.82 +0.2 216,917 + HMPREF1078_RS04835 0.82 -1.6 216,917 + HMPREF1078_RS04835 0.82 -0.0 216,918 - HMPREF1078_RS04835 0.82 -0.7 216,922 - HMPREF1078_RS04835 0.82 -0.2 216,925 + HMPREF1078_RS04835 0.83 -3.0 217,031 - -2.2 217,032 + -0.4 217,032 + +0.2 217,033 - +0.4 217,033 - -0.6 217,033 - -0.6 217,056 + -1.5 217,125 - -0.0 217,189 + -1.5 217,213 - -1.3 217,214 + +1.1 217,214 + -2.4 217,214 + -1.8 217,215 - -3.3 217,215 - -1.4 217,215 - +0.1 217,215 - -0.9 217,215 - -1.4 217,216 + -0.8 217,216 + -1.6 217,216 + +0.1 217,216 + -2.3 217,216 + -0.5 217,217 - +0.1 217,217 - +1.1 217,232 + -2.4 217,382 + -3.1 217,382 + -0.9 217,383 - -2.3 217,383 - -0.9 217,472 + -2.6 217,494 - HMPREF1078_RS04840 0.11 -3.0 217,494 - HMPREF1078_RS04840 0.11 -2.9 217,494 - HMPREF1078_RS04840 0.11 -3.2 217,527 - HMPREF1078_RS04840 0.12 -3.8 217,527 - HMPREF1078_RS04840 0.12 -1.3 217,527 - HMPREF1078_RS04840 0.12 -2.4 217,527 - HMPREF1078_RS04840 0.12 -1.4 217,590 + HMPREF1078_RS04840 0.13 -3.5 217,590 + HMPREF1078_RS04840 0.13 -1.4 217,600 + HMPREF1078_RS04840 0.14 -3.0 217,604 - HMPREF1078_RS04840 0.14 -0.3 217,619 - HMPREF1078_RS04840 0.14 -1.1 217,655 + HMPREF1078_RS04840 0.15 -1.5 217,656 - HMPREF1078_RS04840 0.15 -3.6 217,656 - HMPREF1078_RS04840 0.15 -4.3 217,656 - HMPREF1078_RS04840 0.15 -2.1 217,697 + HMPREF1078_RS04840 0.17 -3.3 217,698 - HMPREF1078_RS04840 0.17 -3.0 217,771 + HMPREF1078_RS04840 0.19 -2.1 217,771 + HMPREF1078_RS04840 0.19 -2.6 217,771 + HMPREF1078_RS04840 0.19 -0.5 217,772 - HMPREF1078_RS04840 0.19 -3.1 217,772 - HMPREF1078_RS04840 0.19 -3.3 217,774 - HMPREF1078_RS04840 0.19 +0.5 217,799 + HMPREF1078_RS04840 0.20 -1.8 217,877 + HMPREF1078_RS04840 0.22 -2.9 217,889 - HMPREF1078_RS04840 0.22 -3.3 218,002 + HMPREF1078_RS04840 0.26 -2.9 218,034 + HMPREF1078_RS04840 0.27 -2.4 218,094 + HMPREF1078_RS04840 0.28 -3.1 218,095 - HMPREF1078_RS04840 0.28 -1.3 218,096 + HMPREF1078_RS04840 0.28 -2.0 218,096 + HMPREF1078_RS04840 0.28 -2.6 218,097 - HMPREF1078_RS04840 0.29 -2.8 218,113 - HMPREF1078_RS04840 0.29 -4.0 218,113 - HMPREF1078_RS04840 0.29 -1.3
Or see this region's nucleotide sequence