Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mcpD and cheW-1 are separated by 45 nucleotides cheW-1 and LysE are separated by 359 nucleotides
DVU0591: mcpD - methyl-accepting chemotaxis protein (TIGR), at 659,306 to 661,264
mcpD
DVU0592: cheW-1 - chemotaxis protein CheW (TIGR), at 661,310 to 661,831
cheW-1
DVU0593: LysE - L-lysine exporter, putative (TIGR), at 662,191 to 662,811
LysE
Position (kb) 661
662 Strain fitness (log2 ratio) -1
0
1
2
3 at 660.363 kb on + strand, within mcpD at 660.417 kb on - strand, within mcpD at 660.448 kb on + strand, within mcpD at 660.501 kb on + strand, within mcpD at 660.625 kb on + strand, within mcpD at 660.727 kb on + strand, within mcpD at 660.844 kb on + strand, within mcpD at 660.958 kb on - strand, within mcpD at 660.984 kb on - strand, within mcpD at 661.052 kb on + strand, within mcpD at 661.063 kb on + strand, within mcpD at 661.087 kb on - strand at 661.098 kb on + strand at 661.140 kb on - strand at 661.140 kb on - strand at 661.160 kb on - strand at 661.177 kb on + strand at 661.185 kb on - strand at 661.235 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.266 kb on - strand at 661.266 kb on - strand at 661.278 kb on + strand at 661.283 kb on + strand at 661.327 kb on + strand at 661.343 kb on - strand at 661.343 kb on - strand at 661.355 kb on - strand at 661.364 kb on - strand, within cheW-1 at 661.411 kb on - strand, within cheW-1 at 661.433 kb on - strand, within cheW-1 at 661.438 kb on - strand, within cheW-1 at 661.461 kb on + strand, within cheW-1 at 661.475 kb on + strand, within cheW-1 at 661.511 kb on + strand, within cheW-1 at 661.704 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.901 kb on - strand at 661.912 kb on - strand at 661.961 kb on + strand at 661.980 kb on + strand at 662.010 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.087 kb on - strand at 662.087 kb on - strand at 662.241 kb on + strand at 662.241 kb on + strand at 662.241 kb on - strand at 662.251 kb on + strand at 662.265 kb on - strand, within LysE at 662.306 kb on - strand, within LysE at 662.407 kb on - strand, within LysE at 662.452 kb on - strand, within LysE at 662.468 kb on + strand, within LysE at 662.491 kb on - strand, within LysE at 662.545 kb on - strand, within LysE at 662.641 kb on - strand, within LysE at 662.728 kb on - strand, within LysE at 662.780 kb on - strand at 662.787 kb on + strand at 662.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 660,363 + mcpD DVU0591 0.54 -0.8 660,417 - mcpD DVU0591 0.57 +0.1 660,448 + mcpD DVU0591 0.58 -1.2 660,501 + mcpD DVU0591 0.61 -0.6 660,625 + mcpD DVU0591 0.67 +0.6 660,727 + mcpD DVU0591 0.73 +3.4 660,844 + mcpD DVU0591 0.79 -1.7 660,958 - mcpD DVU0591 0.84 +0.1 660,984 - mcpD DVU0591 0.86 +0.2 661,052 + mcpD DVU0591 0.89 -0.6 661,063 + mcpD DVU0591 0.90 -1.1 661,087 - +0.4 661,098 + +1.2 661,140 - +0.4 661,140 - +0.3 661,160 - -0.6 661,177 + +0.4 661,185 - -1.3 661,235 + -0.1 661,258 + -0.6 661,258 + -0.6 661,258 + -0.4 661,258 + -1.6 661,266 - -0.3 661,266 - +0.4 661,278 + +0.4 661,283 + -0.2 661,327 + -0.2 661,343 - -0.1 661,343 - -0.6 661,355 - -1.3 661,364 - cheW-1 DVU0592 0.10 +0.1 661,411 - cheW-1 DVU0592 0.19 +0.1 661,433 - cheW-1 DVU0592 0.24 -1.1 661,438 - cheW-1 DVU0592 0.25 +0.6 661,461 + cheW-1 DVU0592 0.29 +1.6 661,475 + cheW-1 DVU0592 0.32 -0.1 661,511 + cheW-1 DVU0592 0.39 +0.1 661,704 + cheW-1 DVU0592 0.75 -1.5 661,750 + cheW-1 DVU0592 0.84 +0.3 661,750 + cheW-1 DVU0592 0.84 +0.2 661,901 - -1.1 661,912 - +0.0 661,961 + +0.5 661,980 + -1.2 662,010 + -0.3 662,079 + -0.9 662,079 + +0.3 662,079 + -0.6 662,079 + -0.9 662,079 + -0.2 662,087 - -0.7 662,087 - -0.2 662,241 + +0.2 662,241 + +0.2 662,241 - -0.4 662,251 + +1.4 662,265 - LysE DVU0593 0.12 +0.1 662,306 - LysE DVU0593 0.19 -0.4 662,407 - LysE DVU0593 0.35 +0.1 662,452 - LysE DVU0593 0.42 -0.2 662,468 + LysE DVU0593 0.45 -0.1 662,491 - LysE DVU0593 0.48 +0.8 662,545 - LysE DVU0593 0.57 +0.7 662,641 - LysE DVU0593 0.72 -0.1 662,728 - LysE DVU0593 0.86 -0.6 662,780 - -0.7 662,787 + -1.0 662,795 - +1.1
Or see this region's nucleotide sequence