Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mviN-1 and DVU1174 are separated by 334 nucleotides DVU1174 and DVU1175 are separated by 36 nucleotides DVU1175 and DVU1176 are separated by 325 nucleotides
DVU1173: mviN-1 - integral membrane protein MviN (TIGR), at 1,264,555 to 1,266,111
mviN-1
DVU1174: DVU1174 - hypothetical protein (TIGR), at 1,266,446 to 1,266,823
DVU1174
DVU1175: DVU1175 - hypothetical protein (TIGR), at 1,266,860 to 1,267,153
DVU1175
DVU1176: DVU1176 - hypothetical protein (TIGR), at 1,267,479 to 1,268,036
DVU1176
Position (kb)
1266
1267 Strain fitness (log2 ratio)
-1
0
1 at 1266.107 kb on + strand at 1266.108 kb on - strand at 1266.120 kb on + strand at 1266.138 kb on + strand at 1266.146 kb on - strand at 1266.229 kb on + strand at 1266.258 kb on - strand at 1266.430 kb on - strand at 1266.430 kb on - strand at 1266.451 kb on + strand at 1266.476 kb on + strand at 1266.531 kb on - strand, within DVU1174 at 1266.719 kb on - strand, within DVU1174 at 1266.744 kb on - strand, within DVU1174 at 1266.755 kb on + strand, within DVU1174 at 1266.882 kb on - strand at 1266.976 kb on - strand, within DVU1175 at 1267.029 kb on + strand, within DVU1175 at 1267.340 kb on + strand at 1267.483 kb on - strand at 1267.541 kb on - strand, within DVU1176 at 1267.546 kb on + strand, within DVU1176 at 1267.590 kb on + strand, within DVU1176 at 1267.590 kb on + strand, within DVU1176 at 1267.619 kb on + strand, within DVU1176 at 1267.671 kb on - strand, within DVU1176 at 1267.728 kb on + strand, within DVU1176 at 1267.752 kb on - strand, within DVU1176 at 1267.754 kb on + strand, within DVU1176 at 1267.754 kb on + strand, within DVU1176 at 1267.757 kb on - strand, within DVU1176 at 1267.762 kb on - strand, within DVU1176
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 1,266,107 + +0.3 1,266,108 - +0.1 1,266,120 + +0.3 1,266,138 + -0.5 1,266,146 - -0.5 1,266,229 + -0.2 1,266,258 - -1.1 1,266,430 - +0.8 1,266,430 - +0.0 1,266,451 + +0.1 1,266,476 + -0.3 1,266,531 - DVU1174 0.22 -1.1 1,266,719 - DVU1174 0.72 -0.5 1,266,744 - DVU1174 0.79 -1.2 1,266,755 + DVU1174 0.82 +0.3 1,266,882 - -0.4 1,266,976 - DVU1175 0.39 +0.3 1,267,029 + DVU1175 0.57 +0.6 1,267,340 + -0.5 1,267,483 - -0.8 1,267,541 - DVU1176 0.11 -0.1 1,267,546 + DVU1176 0.12 -0.3 1,267,590 + DVU1176 0.20 +0.9 1,267,590 + DVU1176 0.20 -0.1 1,267,619 + DVU1176 0.25 -0.6 1,267,671 - DVU1176 0.34 -0.1 1,267,728 + DVU1176 0.45 +0.5 1,267,752 - DVU1176 0.49 +0.1 1,267,754 + DVU1176 0.49 -0.3 1,267,754 + DVU1176 0.49 -0.3 1,267,757 - DVU1176 0.50 -0.8 1,267,762 - DVU1176 0.51 -1.2
Or see this region's nucleotide sequence