Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09265

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09255 and A4249_RS09260 are separated by 62 nucleotidesA4249_RS09260 and A4249_RS16800 are separated by 16 nucleotidesA4249_RS16800 and A4249_RS09265 are separated by 64 nucleotidesA4249_RS09265 and A4249_RS09270 are separated by 64 nucleotidesA4249_RS09270 and A4249_RS09275 are separated by 71 nucleotides A4249_RS09255: A4249_RS09255 - phosphoribosylamine--glycine ligase, at 1,852,189 to 1,853,463 _RS09255 A4249_RS09260: A4249_RS09260 - PRC-barrel domain-containing protein, at 1,853,526 to 1,853,957 _RS09260 A4249_RS16800: A4249_RS16800 - hypothetical protein, at 1,853,974 to 1,854,135 _RS16800 A4249_RS09265: A4249_RS09265 - exodeoxyribonuclease VII large subunit, at 1,854,200 to 1,855,795 _RS09265 A4249_RS09270: A4249_RS09270 - signal peptidase II, at 1,855,860 to 1,856,366 _RS09270 A4249_RS09275: A4249_RS09275 - DUF3035 domain-containing protein, at 1,856,438 to 1,857,004 _RS09275 Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1853.249 kb on - strand, within A4249_RS09255at 1853.515 kb on + strandat 1853.515 kb on + strandat 1853.679 kb on + strand, within A4249_RS09260at 1853.680 kb on - strand, within A4249_RS09260at 1853.680 kb on - strand, within A4249_RS09260at 1853.680 kb on - strand, within A4249_RS09260at 1853.752 kb on + strand, within A4249_RS09260at 1853.752 kb on + strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.753 kb on - strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.754 kb on + strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.755 kb on - strand, within A4249_RS09260at 1853.957 kb on + strandat 1853.958 kb on - strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.975 kb on + strandat 1853.976 kb on - strandat 1853.976 kb on - strandat 1853.996 kb on + strand, within A4249_RS16800at 1853.996 kb on + strand, within A4249_RS16800at 1853.996 kb on + strand, within A4249_RS16800at 1853.997 kb on - strand, within A4249_RS16800at 1853.997 kb on - strand, within A4249_RS16800at 1853.997 kb on - strand, within A4249_RS16800at 1853.997 kb on - strand, within A4249_RS16800at 1854.188 kb on + strandat 1854.188 kb on + strandat 1854.188 kb on + strandat 1854.188 kb on + strandat 1854.189 kb on - strandat 1854.189 kb on - strandat 1854.189 kb on - strandat 1854.189 kb on - strandat 1854.215 kb on + strandat 1854.215 kb on + strandat 1854.215 kb on + strandat 1854.215 kb on + strandat 1854.215 kb on + strandat 1854.215 kb on + strandat 1854.216 kb on - strandat 1854.216 kb on - strandat 1854.216 kb on - strandat 1854.219 kb on + strandat 1854.220 kb on - strandat 1854.220 kb on - strandat 1854.220 kb on - strandat 1854.220 kb on - strandat 1854.383 kb on + strand, within A4249_RS09265at 1854.383 kb on + strand, within A4249_RS09265at 1854.383 kb on + strand, within A4249_RS09265at 1854.384 kb on - strand, within A4249_RS09265at 1854.384 kb on - strand, within A4249_RS09265at 1854.524 kb on + strand, within A4249_RS09265at 1854.524 kb on + strand, within A4249_RS09265at 1854.747 kb on + strand, within A4249_RS09265at 1855.096 kb on + strand, within A4249_RS09265at 1855.097 kb on - strand, within A4249_RS09265at 1856.364 kb on + strandat 1856.364 kb on + strandat 1856.364 kb on + strandat 1856.364 kb on + strandat 1856.364 kb on + strandat 1856.364 kb on + strandat 1856.365 kb on - strandat 1856.382 kb on + strandat 1856.382 kb on + strandat 1856.382 kb on + strandat 1856.383 kb on - strandat 1856.383 kb on - strandat 1856.383 kb on - strandat 1856.443 kb on + strandat 1856.443 kb on + strandat 1856.444 kb on - strandat 1856.594 kb on + strand, within A4249_RS09275at 1856.594 kb on + strand, within A4249_RS09275at 1856.594 kb on + strand, within A4249_RS09275at 1856.595 kb on - strand, within A4249_RS09275at 1856.595 kb on - strand, within A4249_RS09275at 1856.762 kb on + strand, within A4249_RS09275at 1856.762 kb on + strand, within A4249_RS09275at 1856.763 kb on - strand, within A4249_RS09275at 1856.763 kb on - strand, within A4249_RS09275at 1856.763 kb on - strand, within A4249_RS09275at 1856.763 kb on - strand, within A4249_RS09275at 1856.763 kb on - strand, within A4249_RS09275

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,853,249 - A4249_RS09255 0.83 +2.8
1,853,515 + +0.0
1,853,515 + +1.7
1,853,679 + A4249_RS09260 0.35 -0.9
1,853,680 - A4249_RS09260 0.36 -0.2
1,853,680 - A4249_RS09260 0.36 +1.3
1,853,680 - A4249_RS09260 0.36 -1.0
1,853,752 + A4249_RS09260 0.52 +1.0
1,853,752 + A4249_RS09260 0.52 -0.8
1,853,753 - A4249_RS09260 0.53 -0.1
1,853,753 - A4249_RS09260 0.53 +0.5
1,853,753 - A4249_RS09260 0.53 +0.1
1,853,753 - A4249_RS09260 0.53 +0.5
1,853,753 - A4249_RS09260 0.53 -0.6
1,853,753 - A4249_RS09260 0.53 -0.9
1,853,753 - A4249_RS09260 0.53 +0.3
1,853,754 + A4249_RS09260 0.53 -0.5
1,853,754 + A4249_RS09260 0.53 +0.3
1,853,754 + A4249_RS09260 0.53 -0.3
1,853,754 + A4249_RS09260 0.53 +0.1
1,853,754 + A4249_RS09260 0.53 +0.7
1,853,754 + A4249_RS09260 0.53 -1.7
1,853,754 + A4249_RS09260 0.53 -0.1
1,853,754 + A4249_RS09260 0.53 -0.3
1,853,754 + A4249_RS09260 0.53 -0.3
1,853,755 - A4249_RS09260 0.53 +0.7
1,853,755 - A4249_RS09260 0.53 -1.3
1,853,755 - A4249_RS09260 0.53 -0.0
1,853,755 - A4249_RS09260 0.53 +2.0
1,853,755 - A4249_RS09260 0.53 +0.2
1,853,755 - A4249_RS09260 0.53 +0.9
1,853,755 - A4249_RS09260 0.53 -0.1
1,853,755 - A4249_RS09260 0.53 +0.5
1,853,755 - A4249_RS09260 0.53 -0.3
1,853,755 - A4249_RS09260 0.53 -1.1
1,853,755 - A4249_RS09260 0.53 +0.5
1,853,755 - A4249_RS09260 0.53 -0.4
1,853,755 - A4249_RS09260 0.53 -0.4
1,853,755 - A4249_RS09260 0.53 +0.4
1,853,957 + +0.6
1,853,958 - +0.0
1,853,975 + -0.2
1,853,975 + +1.1
1,853,975 + -0.3
1,853,975 + +0.1
1,853,975 + -0.2
1,853,975 + -1.0
1,853,975 + +0.7
1,853,976 - -0.2
1,853,976 - +0.2
1,853,996 + A4249_RS16800 0.14 -2.9
1,853,996 + A4249_RS16800 0.14 -0.3
1,853,996 + A4249_RS16800 0.14 +0.4
1,853,997 - A4249_RS16800 0.14 -0.3
1,853,997 - A4249_RS16800 0.14 -0.3
1,853,997 - A4249_RS16800 0.14 -0.1
1,853,997 - A4249_RS16800 0.14 -0.2
1,854,188 + +0.6
1,854,188 + +0.1
1,854,188 + +0.4
1,854,188 + -0.4
1,854,189 - -1.2
1,854,189 - +0.0
1,854,189 - +0.1
1,854,189 - -0.0
1,854,215 + +0.1
1,854,215 + -0.5
1,854,215 + -1.2
1,854,215 + +0.4
1,854,215 + +0.7
1,854,215 + +0.2
1,854,216 - +0.4
1,854,216 - +0.2
1,854,216 - +1.8
1,854,219 + +0.2
1,854,220 - -0.3
1,854,220 - -0.3
1,854,220 - +0.2
1,854,220 - +0.3
1,854,383 + A4249_RS09265 0.11 +0.2
1,854,383 + A4249_RS09265 0.11 +1.0
1,854,383 + A4249_RS09265 0.11 -0.2
1,854,384 - A4249_RS09265 0.12 +0.2
1,854,384 - A4249_RS09265 0.12 +0.2
1,854,524 + A4249_RS09265 0.20 -0.8
1,854,524 + A4249_RS09265 0.20 -0.1
1,854,747 + A4249_RS09265 0.34 +1.6
1,855,096 + A4249_RS09265 0.56 -0.2
1,855,097 - A4249_RS09265 0.56 -1.8
1,856,364 + -0.8
1,856,364 + -1.5
1,856,364 + -0.4
1,856,364 + -2.4
1,856,364 + -1.0
1,856,364 + -0.3
1,856,365 - -0.4
1,856,382 + +0.2
1,856,382 + +0.4
1,856,382 + -1.4
1,856,383 - -0.4
1,856,383 - -0.5
1,856,383 - -0.6
1,856,443 + -0.5
1,856,443 + -1.4
1,856,444 - -0.3
1,856,594 + A4249_RS09275 0.28 -0.8
1,856,594 + A4249_RS09275 0.28 -0.1
1,856,594 + A4249_RS09275 0.28 -0.3
1,856,595 - A4249_RS09275 0.28 +0.2
1,856,595 - A4249_RS09275 0.28 -0.7
1,856,762 + A4249_RS09275 0.57 -0.1
1,856,762 + A4249_RS09275 0.57 -1.1
1,856,763 - A4249_RS09275 0.57 -0.3
1,856,763 - A4249_RS09275 0.57 -0.2
1,856,763 - A4249_RS09275 0.57 +1.0
1,856,763 - A4249_RS09275 0.57 -1.5
1,856,763 - A4249_RS09275 0.57 -0.4

Or see this region's nucleotide sequence