Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13335

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13325 and A4249_RS13330 are separated by 71 nucleotidesA4249_RS13330 and A4249_RS13335 overlap by 4 nucleotidesA4249_RS13335 and A4249_RS13340 are separated by 65 nucleotidesA4249_RS13340 and A4249_RS13345 are separated by 145 nucleotides A4249_RS13325: A4249_RS13325 - outer membrane lipoprotein carrier protein LolA, at 2,692,006 to 2,692,689 _RS13325 A4249_RS13330: A4249_RS13330 - hypothetical protein, at 2,692,761 to 2,693,312 _RS13330 A4249_RS13335: A4249_RS13335 - DUF2459 domain-containing protein, at 2,693,309 to 2,693,992 _RS13335 A4249_RS13340: A4249_RS13340 - 30S ribosome-binding factor RbfA, at 2,694,058 to 2,694,513 _RS13340 A4249_RS13345: A4249_RS13345 - tRNA pseudouridine(55) synthase TruB, at 2,694,659 to 2,695,588 _RS13345 Position (kb) 2693 2694Strain fitness (log2 ratio) -1 0 1at 2692.687 kb on + strandat 2692.687 kb on + strandat 2692.687 kb on + strandat 2692.687 kb on + strandat 2692.687 kb on + strandat 2692.688 kb on - strandat 2692.688 kb on - strandat 2692.688 kb on - strandat 2692.703 kb on - strandat 2692.703 kb on - strandat 2692.703 kb on - strandat 2692.703 kb on - strandat 2692.703 kb on - strandat 2692.749 kb on + strandat 2692.873 kb on + strand, within A4249_RS13330at 2692.874 kb on - strand, within A4249_RS13330at 2692.874 kb on - strand, within A4249_RS13330at 2692.924 kb on + strand, within A4249_RS13330at 2692.925 kb on - strand, within A4249_RS13330at 2692.962 kb on + strand, within A4249_RS13330at 2692.962 kb on + strand, within A4249_RS13330at 2692.962 kb on + strand, within A4249_RS13330at 2693.454 kb on + strand, within A4249_RS13335at 2693.558 kb on + strand, within A4249_RS13335at 2693.559 kb on - strand, within A4249_RS13335at 2693.675 kb on + strand, within A4249_RS13335at 2693.675 kb on + strand, within A4249_RS13335at 2693.675 kb on + strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.788 kb on - strand, within A4249_RS13335at 2693.990 kb on + strandat 2693.991 kb on - strandat 2693.991 kb on - strandat 2693.991 kb on - strandat 2694.823 kb on + strand, within A4249_RS13345at 2694.882 kb on - strand, within A4249_RS13345

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,692,687 + -0.2
2,692,687 + +0.0
2,692,687 + -0.1
2,692,687 + -0.0
2,692,687 + +1.1
2,692,688 - +1.0
2,692,688 - -0.5
2,692,688 - -0.1
2,692,703 - -0.5
2,692,703 - -0.5
2,692,703 - +0.4
2,692,703 - -0.9
2,692,703 - -0.2
2,692,749 + +0.4
2,692,873 + A4249_RS13330 0.20 -0.1
2,692,874 - A4249_RS13330 0.20 +0.9
2,692,874 - A4249_RS13330 0.20 +0.2
2,692,924 + A4249_RS13330 0.30 -0.1
2,692,925 - A4249_RS13330 0.30 -0.4
2,692,962 + A4249_RS13330 0.36 -1.2
2,692,962 + A4249_RS13330 0.36 -0.2
2,692,962 + A4249_RS13330 0.36 +0.2
2,693,454 + A4249_RS13335 0.21 -0.7
2,693,558 + A4249_RS13335 0.36 -0.9
2,693,559 - A4249_RS13335 0.37 -1.1
2,693,675 + A4249_RS13335 0.54 -0.3
2,693,675 + A4249_RS13335 0.54 -0.1
2,693,675 + A4249_RS13335 0.54 -0.7
2,693,676 - A4249_RS13335 0.54 -1.3
2,693,676 - A4249_RS13335 0.54 +0.6
2,693,676 - A4249_RS13335 0.54 +0.6
2,693,676 - A4249_RS13335 0.54 -0.0
2,693,676 - A4249_RS13335 0.54 -0.5
2,693,676 - A4249_RS13335 0.54 +0.2
2,693,676 - A4249_RS13335 0.54 +0.0
2,693,788 - A4249_RS13335 0.70 -0.8
2,693,990 + +0.7
2,693,991 - -0.3
2,693,991 - -1.1
2,693,991 - -0.1
2,694,823 + A4249_RS13345 0.18 +0.3
2,694,882 - A4249_RS13345 0.24 -0.7

Or see this region's nucleotide sequence