Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01000

Experiment: Thymine 0.793 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS00995 and A4249_RS01000 are separated by 40 nucleotidesA4249_RS01000 and A4249_RS01005 are separated by 4 nucleotides A4249_RS00995: A4249_RS00995 - M48 family metallopeptidase, at 187,622 to 188,827 _RS00995 A4249_RS01000: A4249_RS01000 - DoxX family protein, at 188,868 to 189,329 _RS01000 A4249_RS01005: A4249_RS01005 - beta-ketoacyl-ACP synthase III, at 189,334 to 190,488 _RS01005 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.931 kb on + strand, within A4249_RS00995at 187.931 kb on + strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.992 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.150 kb on + strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.151 kb on - strand, within A4249_RS00995at 188.152 kb on + strand, within A4249_RS00995at 188.152 kb on + strand, within A4249_RS00995at 188.152 kb on + strand, within A4249_RS00995at 188.237 kb on + strand, within A4249_RS00995at 188.237 kb on + strand, within A4249_RS00995at 188.237 kb on + strand, within A4249_RS00995at 188.237 kb on + strand, within A4249_RS00995at 188.238 kb on - strand, within A4249_RS00995at 188.238 kb on - strand, within A4249_RS00995at 188.238 kb on - strand, within A4249_RS00995at 188.238 kb on - strand, within A4249_RS00995at 188.238 kb on - strand, within A4249_RS00995at 188.265 kb on - strand, within A4249_RS00995at 188.294 kb on - strand, within A4249_RS00995at 188.384 kb on + strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.385 kb on - strand, within A4249_RS00995at 188.466 kb on - strand, within A4249_RS00995at 188.588 kb on - strand, within A4249_RS00995at 188.687 kb on + strand, within A4249_RS00995at 188.729 kb on + strandat 188.729 kb on + strandat 188.729 kb on + strandat 188.730 kb on - strandat 188.881 kb on - strandat 188.976 kb on + strand, within A4249_RS01000at 188.976 kb on + strand, within A4249_RS01000at 188.976 kb on + strand, within A4249_RS01000at 188.976 kb on + strand, within A4249_RS01000at 188.977 kb on - strand, within A4249_RS01000at 188.977 kb on - strand, within A4249_RS01000at 188.977 kb on - strand, within A4249_RS01000at 188.977 kb on - strand, within A4249_RS01000at 189.222 kb on + strand, within A4249_RS01000at 189.222 kb on + strand, within A4249_RS01000at 189.222 kb on + strand, within A4249_RS01000at 189.327 kb on + strandat 189.476 kb on + strand, within A4249_RS01005at 189.477 kb on - strand, within A4249_RS01005at 189.477 kb on - strand, within A4249_RS01005at 189.556 kb on + strand, within A4249_RS01005at 189.586 kb on + strand, within A4249_RS01005at 189.586 kb on + strand, within A4249_RS01005at 189.586 kb on + strand, within A4249_RS01005at 189.586 kb on + strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.587 kb on - strand, within A4249_RS01005at 189.783 kb on + strand, within A4249_RS01005at 189.783 kb on + strand, within A4249_RS01005at 189.784 kb on - strand, within A4249_RS01005at 189.784 kb on - strand, within A4249_RS01005at 189.956 kb on - strand, within A4249_RS01005at 189.979 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.027 kb on + strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.028 kb on - strand, within A4249_RS01005at 190.094 kb on + strand, within A4249_RS01005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
remove
187,904 + A4249_RS00995 0.23 +0.1
187,904 + A4249_RS00995 0.23 -0.0
187,904 + A4249_RS00995 0.23 -0.6
187,904 + A4249_RS00995 0.23 -0.4
187,905 - A4249_RS00995 0.23 -0.4
187,905 - A4249_RS00995 0.23 -0.5
187,905 - A4249_RS00995 0.23 -0.9
187,905 - A4249_RS00995 0.23 +1.1
187,905 - A4249_RS00995 0.23 -1.5
187,931 + A4249_RS00995 0.26 -0.0
187,931 + A4249_RS00995 0.26 -0.4
187,932 - A4249_RS00995 0.26 -0.2
187,932 - A4249_RS00995 0.26 -0.0
187,932 - A4249_RS00995 0.26 -0.3
187,932 - A4249_RS00995 0.26 -1.2
187,932 - A4249_RS00995 0.26 +0.2
187,932 - A4249_RS00995 0.26 -0.3
187,932 - A4249_RS00995 0.26 -0.3
187,992 + A4249_RS00995 0.31 +1.4
188,030 + A4249_RS00995 0.34 -0.4
188,030 + A4249_RS00995 0.34 -0.3
188,030 + A4249_RS00995 0.34 -1.5
188,030 + A4249_RS00995 0.34 +0.2
188,030 + A4249_RS00995 0.34 -0.6
188,030 + A4249_RS00995 0.34 +0.5
188,030 + A4249_RS00995 0.34 -1.0
188,030 + A4249_RS00995 0.34 +1.0
188,031 - A4249_RS00995 0.34 -0.1
188,031 - A4249_RS00995 0.34 -1.0
188,031 - A4249_RS00995 0.34 -1.4
188,031 - A4249_RS00995 0.34 -0.2
188,031 - A4249_RS00995 0.34 -0.2
188,031 - A4249_RS00995 0.34 +0.1
188,031 - A4249_RS00995 0.34 +0.6
188,031 - A4249_RS00995 0.34 +0.4
188,150 + A4249_RS00995 0.44 +0.9
188,150 + A4249_RS00995 0.44 -1.0
188,150 + A4249_RS00995 0.44 -0.0
188,150 + A4249_RS00995 0.44 -0.7
188,150 + A4249_RS00995 0.44 +0.1
188,150 + A4249_RS00995 0.44 -0.4
188,150 + A4249_RS00995 0.44 -0.9
188,150 + A4249_RS00995 0.44 -1.0
188,150 + A4249_RS00995 0.44 +0.1
188,150 + A4249_RS00995 0.44 -0.2
188,150 + A4249_RS00995 0.44 -0.6
188,150 + A4249_RS00995 0.44 +0.1
188,150 + A4249_RS00995 0.44 +0.6
188,150 + A4249_RS00995 0.44 -1.4
188,150 + A4249_RS00995 0.44 +0.1
188,150 + A4249_RS00995 0.44 +0.7
188,150 + A4249_RS00995 0.44 +0.1
188,150 + A4249_RS00995 0.44 +0.4
188,150 + A4249_RS00995 0.44 -0.2
188,151 - A4249_RS00995 0.44 +0.2
188,151 - A4249_RS00995 0.44 +1.5
188,151 - A4249_RS00995 0.44 -0.5
188,151 - A4249_RS00995 0.44 -0.2
188,151 - A4249_RS00995 0.44 +0.1
188,151 - A4249_RS00995 0.44 -0.6
188,151 - A4249_RS00995 0.44 -0.2
188,151 - A4249_RS00995 0.44 +1.5
188,151 - A4249_RS00995 0.44 +0.8
188,151 - A4249_RS00995 0.44 -0.1
188,151 - A4249_RS00995 0.44 -1.1
188,151 - A4249_RS00995 0.44 +1.1
188,152 + A4249_RS00995 0.44 +0.1
188,152 + A4249_RS00995 0.44 -0.1
188,152 + A4249_RS00995 0.44 -0.1
188,237 + A4249_RS00995 0.51 -0.1
188,237 + A4249_RS00995 0.51 +0.8
188,237 + A4249_RS00995 0.51 +1.1
188,237 + A4249_RS00995 0.51 +2.2
188,238 - A4249_RS00995 0.51 +0.1
188,238 - A4249_RS00995 0.51 -0.3
188,238 - A4249_RS00995 0.51 +0.0
188,238 - A4249_RS00995 0.51 +0.3
188,238 - A4249_RS00995 0.51 -0.4
188,265 - A4249_RS00995 0.53 -0.1
188,294 - A4249_RS00995 0.56 +0.1
188,384 + A4249_RS00995 0.63 -0.3
188,385 - A4249_RS00995 0.63 +0.1
188,385 - A4249_RS00995 0.63 +0.1
188,385 - A4249_RS00995 0.63 -0.2
188,385 - A4249_RS00995 0.63 -0.1
188,385 - A4249_RS00995 0.63 -1.1
188,385 - A4249_RS00995 0.63 -1.5
188,385 - A4249_RS00995 0.63 -0.5
188,385 - A4249_RS00995 0.63 -0.2
188,466 - A4249_RS00995 0.70 -0.5
188,588 - A4249_RS00995 0.80 -0.2
188,687 + A4249_RS00995 0.88 -0.0
188,729 + +1.1
188,729 + -0.9
188,729 + +0.1
188,730 - +1.1
188,881 - +0.2
188,976 + A4249_RS01000 0.23 +0.3
188,976 + A4249_RS01000 0.23 -1.3
188,976 + A4249_RS01000 0.23 +0.4
188,976 + A4249_RS01000 0.23 +0.4
188,977 - A4249_RS01000 0.24 +0.5
188,977 - A4249_RS01000 0.24 -0.5
188,977 - A4249_RS01000 0.24 -0.5
188,977 - A4249_RS01000 0.24 -1.3
189,222 + A4249_RS01000 0.77 -0.3
189,222 + A4249_RS01000 0.77 +0.3
189,222 + A4249_RS01000 0.77 -1.1
189,327 + -0.0
189,476 + A4249_RS01005 0.12 -2.4
189,477 - A4249_RS01005 0.12 -0.2
189,477 - A4249_RS01005 0.12 -1.4
189,556 + A4249_RS01005 0.19 -1.5
189,586 + A4249_RS01005 0.22 +0.2
189,586 + A4249_RS01005 0.22 -0.7
189,586 + A4249_RS01005 0.22 +0.9
189,586 + A4249_RS01005 0.22 -1.3
189,587 - A4249_RS01005 0.22 +0.5
189,587 - A4249_RS01005 0.22 +0.3
189,587 - A4249_RS01005 0.22 +0.9
189,587 - A4249_RS01005 0.22 +0.7
189,587 - A4249_RS01005 0.22 +0.2
189,587 - A4249_RS01005 0.22 -1.0
189,587 - A4249_RS01005 0.22 +0.6
189,587 - A4249_RS01005 0.22 -0.8
189,783 + A4249_RS01005 0.39 +1.3
189,783 + A4249_RS01005 0.39 -1.5
189,784 - A4249_RS01005 0.39 +0.3
189,784 - A4249_RS01005 0.39 +0.1
189,956 - A4249_RS01005 0.54 +0.2
189,979 + A4249_RS01005 0.56 -0.5
190,027 + A4249_RS01005 0.60 +0.3
190,027 + A4249_RS01005 0.60 +0.4
190,027 + A4249_RS01005 0.60 +0.2
190,027 + A4249_RS01005 0.60 -0.6
190,027 + A4249_RS01005 0.60 +1.2
190,027 + A4249_RS01005 0.60 +1.0
190,028 - A4249_RS01005 0.60 +1.0
190,028 - A4249_RS01005 0.60 +1.1
190,028 - A4249_RS01005 0.60 -0.8
190,028 - A4249_RS01005 0.60 -0.3
190,028 - A4249_RS01005 0.60 +0.9
190,028 - A4249_RS01005 0.60 +0.3
190,094 + A4249_RS01005 0.66 -1.7

Or see this region's nucleotide sequence