Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04502

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04500 and MPMX19_04501 overlap by 8 nucleotidesMPMX19_04501 and MPMX19_04502 are separated by 14 nucleotidesMPMX19_04502 and MPMX19_04503 are separated by 149 nucleotides MPMX19_04500: MPMX19_04500 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 869,192 to 869,887 _04500 MPMX19_04501: MPMX19_04501 - Lipopolysaccharide export system ATP-binding protein LptB, at 869,880 to 870,629 _04501 MPMX19_04502: MPMX19_04502 - hypothetical protein, at 870,644 to 871,783 _04502 MPMX19_04503: MPMX19_04503 - High-affinity branched-chain amino acid transport system permease protein LivH, at 871,933 to 872,802 _04503 Position (kb) 870 871 872Strain fitness (log2 ratio) -2 -1 0 1 2at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.649 kb on + strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.650 kb on - strand, within MPMX19_04500at 869.856 kb on + strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.857 kb on - strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.865 kb on + strandat 869.866 kb on - strandat 869.866 kb on - strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.911 kb on + strandat 869.912 kb on - strandat 869.912 kb on - strandat 869.912 kb on - strandat 869.912 kb on - strandat 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.428 kb on + strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.429 kb on - strand, within MPMX19_04501at 870.622 kb on + strandat 870.622 kb on + strandat 870.622 kb on + strandat 870.623 kb on - strandat 870.623 kb on - strandat 870.623 kb on - strandat 870.990 kb on + strand, within MPMX19_04502at 870.990 kb on + strand, within MPMX19_04502at 870.990 kb on + strand, within MPMX19_04502at 870.990 kb on + strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 870.991 kb on - strand, within MPMX19_04502at 871.063 kb on - strand, within MPMX19_04502at 871.182 kb on + strand, within MPMX19_04502at 871.182 kb on + strand, within MPMX19_04502at 871.182 kb on + strand, within MPMX19_04502at 871.182 kb on + strand, within MPMX19_04502at 871.183 kb on - strand, within MPMX19_04502at 871.183 kb on - strand, within MPMX19_04502at 871.183 kb on - strand, within MPMX19_04502at 871.183 kb on - strand, within MPMX19_04502at 871.183 kb on - strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.185 kb on + strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.186 kb on - strand, within MPMX19_04502at 871.200 kb on + strand, within MPMX19_04502at 871.200 kb on + strand, within MPMX19_04502at 871.201 kb on - strand, within MPMX19_04502at 871.269 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.335 kb on + strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.336 kb on - strand, within MPMX19_04502at 871.554 kb on + strand, within MPMX19_04502at 871.554 kb on + strand, within MPMX19_04502at 871.554 kb on + strand, within MPMX19_04502at 871.555 kb on - strand, within MPMX19_04502at 871.555 kb on - strand, within MPMX19_04502at 871.605 kb on + strand, within MPMX19_04502at 871.605 kb on + strand, within MPMX19_04502at 871.606 kb on - strand, within MPMX19_04502at 871.606 kb on - strand, within MPMX19_04502at 871.654 kb on - strand, within MPMX19_04502at 871.731 kb on + strandat 871.731 kb on + strandat 871.731 kb on + strandat 871.731 kb on + strandat 871.731 kb on + strandat 871.732 kb on + strandat 871.732 kb on - strandat 871.732 kb on - strandat 871.732 kb on - strandat 871.732 kb on - strandat 871.732 kb on - strandat 871.732 kb on - strandat 871.749 kb on + strandat 871.749 kb on + strandat 871.749 kb on + strandat 871.749 kb on + strandat 871.750 kb on - strandat 871.750 kb on - strandat 871.750 kb on - strandat 872.237 kb on + strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.238 kb on - strand, within MPMX19_04503at 872.261 kb on + strand, within MPMX19_04503at 872.261 kb on + strand, within MPMX19_04503at 872.261 kb on + strand, within MPMX19_04503at 872.261 kb on + strand, within MPMX19_04503at 872.384 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.447 kb on + strand, within MPMX19_04503at 872.512 kb on - strand, within MPMX19_04503at 872.540 kb on + strand, within MPMX19_04503at 872.540 kb on + strand, within MPMX19_04503at 872.540 kb on + strand, within MPMX19_04503at 872.540 kb on + strand, within MPMX19_04503at 872.541 kb on - strand, within MPMX19_04503at 872.541 kb on - strand, within MPMX19_04503at 872.541 kb on - strand, within MPMX19_04503at 872.541 kb on - strand, within MPMX19_04503at 872.717 kb on + strandat 872.717 kb on + strandat 872.717 kb on + strandat 872.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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869,649 + MPMX19_04500 0.66 -1.4
869,649 + MPMX19_04500 0.66 +0.9
869,649 + MPMX19_04500 0.66 +0.5
869,649 + MPMX19_04500 0.66 -0.7
869,649 + MPMX19_04500 0.66 -0.1
869,649 + MPMX19_04500 0.66 -1.7
869,649 + MPMX19_04500 0.66 +0.6
869,649 + MPMX19_04500 0.66 +0.9
869,650 - MPMX19_04500 0.66 -1.4
869,650 - MPMX19_04500 0.66 -0.3
869,650 - MPMX19_04500 0.66 -0.4
869,650 - MPMX19_04500 0.66 -1.1
869,650 - MPMX19_04500 0.66 +0.5
869,650 - MPMX19_04500 0.66 +0.1
869,650 - MPMX19_04500 0.66 +0.3
869,650 - MPMX19_04500 0.66 -1.8
869,650 - MPMX19_04500 0.66 +0.3
869,856 + -0.7
869,857 - -0.1
869,857 - +0.1
869,857 - -0.4
869,857 - -2.3
869,865 + -1.6
869,865 + -0.4
869,865 + -0.5
869,865 + -0.3
869,866 - -1.0
869,866 - -1.4
869,911 + -0.8
869,911 + -1.3
869,911 + +0.9
869,911 + +0.9
869,911 + -0.1
869,912 - -0.1
869,912 - +0.9
869,912 - +0.2
869,912 - -1.6
870,428 + MPMX19_04501 0.73 +0.1
870,428 + MPMX19_04501 0.73 -0.7
870,428 + MPMX19_04501 0.73 -1.0
870,428 + MPMX19_04501 0.73 -1.6
870,428 + MPMX19_04501 0.73 -0.9
870,428 + MPMX19_04501 0.73 -1.0
870,428 + MPMX19_04501 0.73 -0.4
870,428 + MPMX19_04501 0.73 -0.6
870,429 - MPMX19_04501 0.73 +1.1
870,429 - MPMX19_04501 0.73 -0.7
870,429 - MPMX19_04501 0.73 -0.2
870,429 - MPMX19_04501 0.73 -0.7
870,622 + -1.0
870,622 + -1.1
870,622 + +0.9
870,623 - -0.3
870,623 - -0.3
870,623 - +0.5
870,990 + MPMX19_04502 0.30 -0.1
870,990 + MPMX19_04502 0.30 -0.4
870,990 + MPMX19_04502 0.30 -1.1
870,990 + MPMX19_04502 0.30 +1.6
870,991 - MPMX19_04502 0.30 -1.1
870,991 - MPMX19_04502 0.30 -0.3
870,991 - MPMX19_04502 0.30 -1.5
870,991 - MPMX19_04502 0.30 +0.2
870,991 - MPMX19_04502 0.30 -0.1
870,991 - MPMX19_04502 0.30 +0.1
870,991 - MPMX19_04502 0.30 -1.7
870,991 - MPMX19_04502 0.30 +0.5
871,063 - MPMX19_04502 0.37 -0.7
871,182 + MPMX19_04502 0.47 -1.4
871,182 + MPMX19_04502 0.47 -1.8
871,182 + MPMX19_04502 0.47 +0.5
871,182 + MPMX19_04502 0.47 -0.4
871,183 - MPMX19_04502 0.47 -0.5
871,183 - MPMX19_04502 0.47 -1.1
871,183 - MPMX19_04502 0.47 -1.4
871,183 - MPMX19_04502 0.47 -0.1
871,183 - MPMX19_04502 0.47 -0.5
871,185 + MPMX19_04502 0.47 -2.1
871,185 + MPMX19_04502 0.47 -1.1
871,185 + MPMX19_04502 0.47 -0.9
871,185 + MPMX19_04502 0.47 -1.9
871,185 + MPMX19_04502 0.47 -0.9
871,185 + MPMX19_04502 0.47 -0.7
871,185 + MPMX19_04502 0.47 -0.7
871,185 + MPMX19_04502 0.47 +0.2
871,185 + MPMX19_04502 0.47 +1.5
871,185 + MPMX19_04502 0.47 -2.2
871,185 + MPMX19_04502 0.47 -0.3
871,185 + MPMX19_04502 0.47 +0.2
871,185 + MPMX19_04502 0.47 -0.4
871,185 + MPMX19_04502 0.47 -1.7
871,185 + MPMX19_04502 0.47 -0.6
871,185 + MPMX19_04502 0.47 -0.7
871,185 + MPMX19_04502 0.47 +1.1
871,185 + MPMX19_04502 0.47 -1.2
871,185 + MPMX19_04502 0.47 -0.2
871,185 + MPMX19_04502 0.47 -1.4
871,185 + MPMX19_04502 0.47 -0.7
871,185 + MPMX19_04502 0.47 +0.5
871,186 - MPMX19_04502 0.48 -1.9
871,186 - MPMX19_04502 0.48 +0.1
871,186 - MPMX19_04502 0.48 -0.5
871,186 - MPMX19_04502 0.48 -1.7
871,186 - MPMX19_04502 0.48 -0.5
871,186 - MPMX19_04502 0.48 -0.4
871,186 - MPMX19_04502 0.48 -0.1
871,186 - MPMX19_04502 0.48 -0.4
871,186 - MPMX19_04502 0.48 -1.2
871,186 - MPMX19_04502 0.48 -0.7
871,186 - MPMX19_04502 0.48 -1.1
871,186 - MPMX19_04502 0.48 -2.1
871,186 - MPMX19_04502 0.48 -1.1
871,186 - MPMX19_04502 0.48 -1.7
871,186 - MPMX19_04502 0.48 +0.0
871,200 + MPMX19_04502 0.49 -1.9
871,200 + MPMX19_04502 0.49 -1.7
871,201 - MPMX19_04502 0.49 +0.7
871,269 + MPMX19_04502 0.55 +0.1
871,335 + MPMX19_04502 0.61 -0.7
871,335 + MPMX19_04502 0.61 +0.7
871,335 + MPMX19_04502 0.61 -0.9
871,335 + MPMX19_04502 0.61 +0.3
871,335 + MPMX19_04502 0.61 +0.3
871,335 + MPMX19_04502 0.61 -1.3
871,335 + MPMX19_04502 0.61 -0.4
871,336 - MPMX19_04502 0.61 +0.1
871,336 - MPMX19_04502 0.61 -0.3
871,336 - MPMX19_04502 0.61 +0.3
871,336 - MPMX19_04502 0.61 -1.7
871,336 - MPMX19_04502 0.61 -0.7
871,336 - MPMX19_04502 0.61 -0.5
871,336 - MPMX19_04502 0.61 -0.7
871,336 - MPMX19_04502 0.61 +1.9
871,336 - MPMX19_04502 0.61 -0.7
871,336 - MPMX19_04502 0.61 +0.2
871,336 - MPMX19_04502 0.61 -1.4
871,336 - MPMX19_04502 0.61 -0.1
871,336 - MPMX19_04502 0.61 -0.9
871,336 - MPMX19_04502 0.61 -1.1
871,336 - MPMX19_04502 0.61 +0.2
871,336 - MPMX19_04502 0.61 -1.4
871,336 - MPMX19_04502 0.61 -0.4
871,336 - MPMX19_04502 0.61 -0.5
871,554 + MPMX19_04502 0.80 -2.0
871,554 + MPMX19_04502 0.80 -1.1
871,554 + MPMX19_04502 0.80 -1.1
871,555 - MPMX19_04502 0.80 -1.0
871,555 - MPMX19_04502 0.80 -0.1
871,605 + MPMX19_04502 0.84 -0.7
871,605 + MPMX19_04502 0.84 +0.2
871,606 - MPMX19_04502 0.84 -0.6
871,606 - MPMX19_04502 0.84 -1.1
871,654 - MPMX19_04502 0.89 +1.5
871,731 + +0.6
871,731 + -0.1
871,731 + -1.1
871,731 + -0.1
871,731 + -1.1
871,732 + -0.1
871,732 - -1.4
871,732 - -1.5
871,732 - +0.3
871,732 - +0.1
871,732 - +0.3
871,732 - -1.0
871,749 + +0.7
871,749 + -0.6
871,749 + +0.6
871,749 + -0.6
871,750 - -0.9
871,750 - +0.0
871,750 - -2.1
872,237 + MPMX19_04503 0.35 +1.3
872,238 - MPMX19_04503 0.35 +0.3
872,238 - MPMX19_04503 0.35 -0.8
872,238 - MPMX19_04503 0.35 -1.7
872,238 - MPMX19_04503 0.35 +0.3
872,238 - MPMX19_04503 0.35 +0.6
872,238 - MPMX19_04503 0.35 -0.4
872,238 - MPMX19_04503 0.35 -0.1
872,261 + MPMX19_04503 0.38 -0.4
872,261 + MPMX19_04503 0.38 -0.5
872,261 + MPMX19_04503 0.38 +0.3
872,261 + MPMX19_04503 0.38 +0.9
872,384 + MPMX19_04503 0.52 -0.4
872,447 + MPMX19_04503 0.59 -0.7
872,447 + MPMX19_04503 0.59 +0.5
872,447 + MPMX19_04503 0.59 -1.1
872,447 + MPMX19_04503 0.59 -0.6
872,447 + MPMX19_04503 0.59 -0.1
872,447 + MPMX19_04503 0.59 -0.1
872,512 - MPMX19_04503 0.67 +0.2
872,540 + MPMX19_04503 0.70 +0.2
872,540 + MPMX19_04503 0.70 -2.1
872,540 + MPMX19_04503 0.70 -0.6
872,540 + MPMX19_04503 0.70 -0.6
872,541 - MPMX19_04503 0.70 -0.9
872,541 - MPMX19_04503 0.70 +1.2
872,541 - MPMX19_04503 0.70 -2.1
872,541 - MPMX19_04503 0.70 -2.0
872,717 + +0.9
872,717 + -0.3
872,717 + +0.4
872,718 - -1.1

Or see this region's nucleotide sequence