Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01888 and MPMX19_01889 are separated by 28 nucleotides MPMX19_01889 and MPMX19_01890 are separated by 180 nucleotides MPMX19_01890 and MPMX19_01891 are separated by 136 nucleotides
MPMX19_01888: MPMX19_01888 - Cysteine--tRNA ligase, at 1,969,829 to 1,971,205
_01888
MPMX19_01889: MPMX19_01889 - Glutamate--tRNA ligase 1, at 1,971,234 to 1,972,589
_01889
MPMX19_01890: MPMX19_01890 - Glyoxalase ElbB, at 1,972,770 to 1,973,438
_01890
MPMX19_01891: MPMX19_01891 - hypothetical protein, at 1,973,575 to 1,974,144
_01891
Position (kb) 1971
1972
1973 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1971.229 kb on - strand at 1971.229 kb on - strand at 1971.229 kb on - strand at 1971.229 kb on - strand at 1971.229 kb on - strand at 1971.229 kb on - strand at 1972.231 kb on + strand, within MPMX19_01889 at 1972.630 kb on - strand at 1972.630 kb on - strand at 1972.630 kb on - strand at 1972.630 kb on - strand at 1972.630 kb on - strand at 1972.712 kb on + strand at 1972.712 kb on + strand at 1972.713 kb on - strand at 1972.713 kb on - strand at 1972.735 kb on + strand at 1972.735 kb on + strand at 1972.735 kb on + strand at 1972.735 kb on + strand at 1972.735 kb on + strand at 1972.736 kb on - strand at 1972.736 kb on - strand at 1972.736 kb on - strand at 1972.736 kb on - strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.769 kb on + strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.770 kb on - strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.821 kb on + strand at 1972.822 kb on - strand at 1972.822 kb on - strand at 1972.822 kb on - strand at 1972.822 kb on - strand at 1972.896 kb on + strand, within MPMX19_01890 at 1972.896 kb on + strand, within MPMX19_01890 at 1972.896 kb on + strand, within MPMX19_01890 at 1972.896 kb on + strand, within MPMX19_01890 at 1972.897 kb on - strand, within MPMX19_01890 at 1972.897 kb on - strand, within MPMX19_01890 at 1972.897 kb on - strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.358 kb on + strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.359 kb on - strand, within MPMX19_01890 at 1973.405 kb on + strand at 1973.405 kb on + strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.406 kb on - strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.436 kb on + strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.437 kb on - strand at 1973.465 kb on + strand at 1973.471 kb on + strand at 1973.510 kb on + strand at 1973.510 kb on + strand at 1973.510 kb on + strand at 1973.511 kb on - strand at 1973.511 kb on - strand at 1973.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 1,971,229 - -0.3 1,971,229 - +0.6 1,971,229 - +0.3 1,971,229 - -0.6 1,971,229 - -1.1 1,971,229 - +0.0 1,972,231 + MPMX19_01889 0.74 -1.0 1,972,630 - -1.3 1,972,630 - -0.1 1,972,630 - -0.3 1,972,630 - -1.2 1,972,630 - +1.0 1,972,712 + +0.0 1,972,712 + -0.6 1,972,713 - +0.6 1,972,713 - -1.6 1,972,735 + -2.1 1,972,735 + -2.1 1,972,735 + -0.8 1,972,735 + +0.0 1,972,735 + +0.2 1,972,736 - -0.1 1,972,736 - +0.0 1,972,736 - +0.4 1,972,736 - +0.2 1,972,769 + +0.5 1,972,769 + +2.6 1,972,769 + +0.3 1,972,769 + +0.4 1,972,769 + +0.0 1,972,769 + -0.4 1,972,769 + +0.6 1,972,770 - +0.5 1,972,770 - +1.3 1,972,770 - +0.1 1,972,770 - +0.9 1,972,770 - -1.0 1,972,770 - +0.3 1,972,770 - +0.2 1,972,770 - +0.0 1,972,821 + +0.8 1,972,821 + +0.0 1,972,821 + +0.9 1,972,821 + -0.2 1,972,821 + +1.5 1,972,821 + -0.3 1,972,821 + -0.3 1,972,821 + +1.8 1,972,822 - +0.8 1,972,822 - +0.9 1,972,822 - +0.4 1,972,822 - +0.5 1,972,896 + MPMX19_01890 0.19 +1.0 1,972,896 + MPMX19_01890 0.19 +0.8 1,972,896 + MPMX19_01890 0.19 +1.8 1,972,896 + MPMX19_01890 0.19 +0.7 1,972,897 - MPMX19_01890 0.19 +2.0 1,972,897 - MPMX19_01890 0.19 -1.3 1,972,897 - MPMX19_01890 0.19 +1.4 1,973,358 + MPMX19_01890 0.88 +0.3 1,973,358 + MPMX19_01890 0.88 +1.0 1,973,358 + MPMX19_01890 0.88 +1.4 1,973,358 + MPMX19_01890 0.88 +1.3 1,973,358 + MPMX19_01890 0.88 +0.7 1,973,358 + MPMX19_01890 0.88 +0.4 1,973,358 + MPMX19_01890 0.88 +1.7 1,973,358 + MPMX19_01890 0.88 +0.0 1,973,358 + MPMX19_01890 0.88 -1.0 1,973,358 + MPMX19_01890 0.88 +0.6 1,973,358 + MPMX19_01890 0.88 +1.3 1,973,358 + MPMX19_01890 0.88 +2.0 1,973,358 + MPMX19_01890 0.88 +1.0 1,973,358 + MPMX19_01890 0.88 -1.6 1,973,358 + MPMX19_01890 0.88 +1.9 1,973,358 + MPMX19_01890 0.88 -0.8 1,973,358 + MPMX19_01890 0.88 +0.1 1,973,358 + MPMX19_01890 0.88 +1.0 1,973,358 + MPMX19_01890 0.88 -1.6 1,973,358 + MPMX19_01890 0.88 -0.3 1,973,358 + MPMX19_01890 0.88 +0.7 1,973,358 + MPMX19_01890 0.88 +0.3 1,973,358 + MPMX19_01890 0.88 -0.3 1,973,358 + MPMX19_01890 0.88 +1.2 1,973,359 - MPMX19_01890 0.88 +0.0 1,973,359 - MPMX19_01890 0.88 -0.1 1,973,359 - MPMX19_01890 0.88 -1.6 1,973,359 - MPMX19_01890 0.88 +0.2 1,973,359 - MPMX19_01890 0.88 +2.6 1,973,359 - MPMX19_01890 0.88 +0.4 1,973,359 - MPMX19_01890 0.88 -1.0 1,973,359 - MPMX19_01890 0.88 -1.6 1,973,359 - MPMX19_01890 0.88 -1.0 1,973,359 - MPMX19_01890 0.88 +1.0 1,973,359 - MPMX19_01890 0.88 +1.7 1,973,359 - MPMX19_01890 0.88 +1.2 1,973,359 - MPMX19_01890 0.88 +1.0 1,973,359 - MPMX19_01890 0.88 +0.2 1,973,359 - MPMX19_01890 0.88 -0.2 1,973,359 - MPMX19_01890 0.88 +1.0 1,973,359 - MPMX19_01890 0.88 +0.5 1,973,359 - MPMX19_01890 0.88 +0.8 1,973,359 - MPMX19_01890 0.88 +0.9 1,973,359 - MPMX19_01890 0.88 +1.3 1,973,359 - MPMX19_01890 0.88 -2.1 1,973,359 - MPMX19_01890 0.88 +0.4 1,973,359 - MPMX19_01890 0.88 +1.0 1,973,359 - MPMX19_01890 0.88 +0.5 1,973,359 - MPMX19_01890 0.88 +1.2 1,973,359 - MPMX19_01890 0.88 -2.6 1,973,359 - MPMX19_01890 0.88 +0.6 1,973,359 - MPMX19_01890 0.88 +0.5 1,973,359 - MPMX19_01890 0.88 +2.0 1,973,359 - MPMX19_01890 0.88 +0.2 1,973,359 - MPMX19_01890 0.88 -0.1 1,973,359 - MPMX19_01890 0.88 -0.3 1,973,359 - MPMX19_01890 0.88 -1.3 1,973,359 - MPMX19_01890 0.88 +1.3 1,973,359 - MPMX19_01890 0.88 -0.4 1,973,359 - MPMX19_01890 0.88 +0.7 1,973,405 + -0.6 1,973,405 + +1.0 1,973,406 - +2.8 1,973,406 - +0.3 1,973,406 - -0.4 1,973,406 - -0.4 1,973,406 - +0.6 1,973,406 - +1.9 1,973,406 - +0.5 1,973,436 + +0.1 1,973,436 + -1.8 1,973,436 + -0.9 1,973,436 + +0.7 1,973,436 + -0.2 1,973,436 + +0.0 1,973,436 + +0.5 1,973,436 + +0.5 1,973,436 + +0.0 1,973,436 + +2.0 1,973,436 + +1.6 1,973,436 + +1.6 1,973,436 + -1.0 1,973,437 - -2.1 1,973,437 - +0.7 1,973,437 - +0.6 1,973,437 - +0.0 1,973,437 - +1.2 1,973,437 - -0.2 1,973,437 - +2.0 1,973,437 - +0.6 1,973,437 - +0.3 1,973,437 - -1.0 1,973,465 + +0.2 1,973,471 + +0.4 1,973,510 + -0.4 1,973,510 + +0.0 1,973,510 + -0.4 1,973,511 - -0.1 1,973,511 - -1.6 1,973,557 - -1.1
Or see this region's nucleotide sequence