Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05312

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05311 and MPMX19_05312 overlap by 4 nucleotidesMPMX19_05312 and MPMX19_05313 are separated by 294 nucleotides MPMX19_05311: MPMX19_05311 - 4,4'-diapolycopene oxygenase, at 847,716 to 849,269 _05311 MPMX19_05312: MPMX19_05312 - 4,4'-diapophytoene desaturase (4,4'-diapolycopene-forming), at 849,266 to 850,765 _05312 MPMX19_05313: MPMX19_05313 - 4,4'-diapolycopene aldehyde oxidase, at 851,060 to 852,355 _05313 Position (kb) 849 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 848.293 kb on + strand, within MPMX19_05311at 848.293 kb on + strand, within MPMX19_05311at 848.293 kb on + strand, within MPMX19_05311at 848.293 kb on + strand, within MPMX19_05311at 848.294 kb on - strand, within MPMX19_05311at 848.294 kb on - strand, within MPMX19_05311at 848.294 kb on - strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.314 kb on + strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.315 kb on - strand, within MPMX19_05311at 848.345 kb on - strand, within MPMX19_05311at 848.345 kb on - strand, within MPMX19_05311at 848.398 kb on + strand, within MPMX19_05311at 848.398 kb on + strand, within MPMX19_05311at 848.399 kb on - strand, within MPMX19_05311at 848.399 kb on - strand, within MPMX19_05311at 848.496 kb on + strand, within MPMX19_05311at 848.496 kb on + strand, within MPMX19_05311at 848.497 kb on - strand, within MPMX19_05311at 848.497 kb on - strand, within MPMX19_05311at 848.497 kb on - strand, within MPMX19_05311at 848.497 kb on - strand, within MPMX19_05311at 848.653 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.671 kb on + strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 848.672 kb on - strand, within MPMX19_05311at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.438 kb on + strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.439 kb on - strand, within MPMX19_05312at 849.643 kb on - strand, within MPMX19_05312at 849.703 kb on + strand, within MPMX19_05312at 849.703 kb on + strand, within MPMX19_05312at 849.703 kb on + strand, within MPMX19_05312at 849.703 kb on + strand, within MPMX19_05312at 849.703 kb on + strand, within MPMX19_05312at 849.704 kb on - strand, within MPMX19_05312at 849.704 kb on - strand, within MPMX19_05312at 849.704 kb on - strand, within MPMX19_05312at 849.704 kb on - strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.705 kb on + strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.706 kb on - strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.765 kb on + strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.766 kb on - strand, within MPMX19_05312at 849.825 kb on + strand, within MPMX19_05312at 849.825 kb on + strand, within MPMX19_05312at 849.825 kb on + strand, within MPMX19_05312at 849.840 kb on + strand, within MPMX19_05312at 849.840 kb on + strand, within MPMX19_05312at 849.841 kb on - strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.888 kb on + strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 849.889 kb on - strand, within MPMX19_05312at 850.076 kb on - strand, within MPMX19_05312at 850.076 kb on - strand, within MPMX19_05312at 850.248 kb on + strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.249 kb on - strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.296 kb on + strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.297 kb on - strand, within MPMX19_05312at 850.557 kb on + strand, within MPMX19_05312at 850.641 kb on + strandat 850.641 kb on + strandat 850.642 kb on - strandat 850.642 kb on - strandat 850.865 kb on + strandat 850.865 kb on + strandat 850.866 kb on - strandat 850.866 kb on - strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.917 kb on + strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.918 kb on - strandat 850.930 kb on - strandat 850.930 kb on - strandat 850.963 kb on + strandat 850.964 kb on - strandat 850.985 kb on - strandat 850.985 kb on - strandat 850.993 kb on - strandat 851.273 kb on + strand, within MPMX19_05313at 851.273 kb on + strand, within MPMX19_05313at 851.273 kb on + strand, within MPMX19_05313at 851.274 kb on - strand, within MPMX19_05313

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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848,293 + MPMX19_05311 0.37 -1.5
848,293 + MPMX19_05311 0.37 +0.5
848,293 + MPMX19_05311 0.37 -1.5
848,293 + MPMX19_05311 0.37 +0.8
848,294 - MPMX19_05311 0.37 -0.5
848,294 - MPMX19_05311 0.37 -1.0
848,294 - MPMX19_05311 0.37 +0.5
848,314 + MPMX19_05311 0.38 -0.9
848,314 + MPMX19_05311 0.38 -1.7
848,314 + MPMX19_05311 0.38 +0.4
848,314 + MPMX19_05311 0.38 -0.2
848,314 + MPMX19_05311 0.38 -1.5
848,314 + MPMX19_05311 0.38 -1.6
848,315 - MPMX19_05311 0.39 +0.4
848,315 - MPMX19_05311 0.39 -0.6
848,315 - MPMX19_05311 0.39 -0.3
848,315 - MPMX19_05311 0.39 -0.5
848,315 - MPMX19_05311 0.39 +0.9
848,315 - MPMX19_05311 0.39 -0.5
848,315 - MPMX19_05311 0.39 -1.7
848,345 - MPMX19_05311 0.40 -0.1
848,345 - MPMX19_05311 0.40 +1.3
848,398 + MPMX19_05311 0.44 -1.0
848,398 + MPMX19_05311 0.44 +0.2
848,399 - MPMX19_05311 0.44 -0.2
848,399 - MPMX19_05311 0.44 -1.2
848,496 + MPMX19_05311 0.50 -2.2
848,496 + MPMX19_05311 0.50 -0.7
848,497 - MPMX19_05311 0.50 +0.3
848,497 - MPMX19_05311 0.50 +0.8
848,497 - MPMX19_05311 0.50 -0.8
848,497 - MPMX19_05311 0.50 +0.2
848,653 + MPMX19_05311 0.60 -0.9
848,671 + MPMX19_05311 0.61 +0.6
848,671 + MPMX19_05311 0.61 -1.2
848,671 + MPMX19_05311 0.61 -1.9
848,671 + MPMX19_05311 0.61 -0.1
848,671 + MPMX19_05311 0.61 +1.1
848,671 + MPMX19_05311 0.61 +0.3
848,671 + MPMX19_05311 0.61 -1.5
848,671 + MPMX19_05311 0.61 +0.1
848,671 + MPMX19_05311 0.61 +0.8
848,671 + MPMX19_05311 0.61 -0.0
848,671 + MPMX19_05311 0.61 +0.2
848,671 + MPMX19_05311 0.61 -0.6
848,671 + MPMX19_05311 0.61 -0.6
848,672 - MPMX19_05311 0.62 +0.4
848,672 - MPMX19_05311 0.62 -1.7
848,672 - MPMX19_05311 0.62 +0.4
848,672 - MPMX19_05311 0.62 +0.1
848,672 - MPMX19_05311 0.62 +0.6
848,672 - MPMX19_05311 0.62 -0.9
848,672 - MPMX19_05311 0.62 -0.3
848,672 - MPMX19_05311 0.62 -1.7
848,672 - MPMX19_05311 0.62 -0.2
849,438 + MPMX19_05312 0.11 -0.5
849,438 + MPMX19_05312 0.11 -0.3
849,438 + MPMX19_05312 0.11 -0.5
849,438 + MPMX19_05312 0.11 -0.9
849,438 + MPMX19_05312 0.11 -0.9
849,438 + MPMX19_05312 0.11 +0.8
849,438 + MPMX19_05312 0.11 -1.4
849,438 + MPMX19_05312 0.11 +0.1
849,438 + MPMX19_05312 0.11 +0.1
849,438 + MPMX19_05312 0.11 +1.1
849,438 + MPMX19_05312 0.11 -2.0
849,439 - MPMX19_05312 0.12 +0.9
849,439 - MPMX19_05312 0.12 -1.0
849,439 - MPMX19_05312 0.12 -0.1
849,439 - MPMX19_05312 0.12 +0.5
849,439 - MPMX19_05312 0.12 -0.9
849,439 - MPMX19_05312 0.12 -0.2
849,439 - MPMX19_05312 0.12 -1.6
849,643 - MPMX19_05312 0.25 +0.9
849,703 + MPMX19_05312 0.29 +0.1
849,703 + MPMX19_05312 0.29 +0.9
849,703 + MPMX19_05312 0.29 +0.7
849,703 + MPMX19_05312 0.29 +1.1
849,703 + MPMX19_05312 0.29 -1.6
849,704 - MPMX19_05312 0.29 -2.0
849,704 - MPMX19_05312 0.29 -0.7
849,704 - MPMX19_05312 0.29 +1.4
849,704 - MPMX19_05312 0.29 -0.5
849,705 + MPMX19_05312 0.29 +0.5
849,705 + MPMX19_05312 0.29 -0.9
849,705 + MPMX19_05312 0.29 -0.7
849,705 + MPMX19_05312 0.29 -0.5
849,705 + MPMX19_05312 0.29 -0.7
849,705 + MPMX19_05312 0.29 -2.3
849,705 + MPMX19_05312 0.29 -1.2
849,705 + MPMX19_05312 0.29 +0.3
849,705 + MPMX19_05312 0.29 -0.1
849,705 + MPMX19_05312 0.29 +0.1
849,705 + MPMX19_05312 0.29 +0.4
849,705 + MPMX19_05312 0.29 -1.3
849,705 + MPMX19_05312 0.29 +0.3
849,705 + MPMX19_05312 0.29 +0.1
849,705 + MPMX19_05312 0.29 -1.3
849,706 - MPMX19_05312 0.29 +0.4
849,706 - MPMX19_05312 0.29 -0.2
849,706 - MPMX19_05312 0.29 -1.0
849,706 - MPMX19_05312 0.29 -0.5
849,706 - MPMX19_05312 0.29 +1.0
849,706 - MPMX19_05312 0.29 -0.7
849,706 - MPMX19_05312 0.29 -1.2
849,706 - MPMX19_05312 0.29 +0.9
849,706 - MPMX19_05312 0.29 +1.1
849,765 + MPMX19_05312 0.33 +1.7
849,765 + MPMX19_05312 0.33 +0.5
849,765 + MPMX19_05312 0.33 -1.2
849,765 + MPMX19_05312 0.33 +0.1
849,765 + MPMX19_05312 0.33 +0.2
849,765 + MPMX19_05312 0.33 -0.6
849,765 + MPMX19_05312 0.33 +1.9
849,765 + MPMX19_05312 0.33 -1.2
849,765 + MPMX19_05312 0.33 -1.2
849,765 + MPMX19_05312 0.33 -0.2
849,765 + MPMX19_05312 0.33 -1.2
849,766 - MPMX19_05312 0.33 +1.7
849,766 - MPMX19_05312 0.33 -1.5
849,766 - MPMX19_05312 0.33 -0.1
849,766 - MPMX19_05312 0.33 +0.9
849,766 - MPMX19_05312 0.33 -0.3
849,766 - MPMX19_05312 0.33 -0.1
849,766 - MPMX19_05312 0.33 +0.6
849,766 - MPMX19_05312 0.33 +1.9
849,766 - MPMX19_05312 0.33 +0.5
849,766 - MPMX19_05312 0.33 -1.2
849,766 - MPMX19_05312 0.33 -0.2
849,825 + MPMX19_05312 0.37 -0.9
849,825 + MPMX19_05312 0.37 -1.3
849,825 + MPMX19_05312 0.37 +0.1
849,840 + MPMX19_05312 0.38 -0.0
849,840 + MPMX19_05312 0.38 +0.5
849,841 - MPMX19_05312 0.38 -0.5
849,888 + MPMX19_05312 0.41 -0.0
849,888 + MPMX19_05312 0.41 +0.3
849,888 + MPMX19_05312 0.41 +0.5
849,888 + MPMX19_05312 0.41 -0.2
849,888 + MPMX19_05312 0.41 +0.5
849,888 + MPMX19_05312 0.41 +1.1
849,888 + MPMX19_05312 0.41 -1.2
849,888 + MPMX19_05312 0.41 -1.5
849,888 + MPMX19_05312 0.41 +1.1
849,888 + MPMX19_05312 0.41 -0.2
849,888 + MPMX19_05312 0.41 +1.4
849,888 + MPMX19_05312 0.41 -1.2
849,889 - MPMX19_05312 0.42 -1.5
849,889 - MPMX19_05312 0.42 -0.2
849,889 - MPMX19_05312 0.42 -0.2
849,889 - MPMX19_05312 0.42 +0.2
849,889 - MPMX19_05312 0.42 -1.1
849,889 - MPMX19_05312 0.42 -1.4
849,889 - MPMX19_05312 0.42 -1.2
849,889 - MPMX19_05312 0.42 +0.5
849,889 - MPMX19_05312 0.42 -0.2
850,076 - MPMX19_05312 0.54 +0.6
850,076 - MPMX19_05312 0.54 +0.1
850,248 + MPMX19_05312 0.65 +0.1
850,249 - MPMX19_05312 0.66 -0.7
850,249 - MPMX19_05312 0.66 -0.9
850,249 - MPMX19_05312 0.66 -1.2
850,296 + MPMX19_05312 0.69 -0.5
850,296 + MPMX19_05312 0.69 -0.9
850,296 + MPMX19_05312 0.69 +1.7
850,297 - MPMX19_05312 0.69 -1.5
850,297 - MPMX19_05312 0.69 -1.5
850,297 - MPMX19_05312 0.69 -0.9
850,557 + MPMX19_05312 0.86 -1.7
850,641 + +1.1
850,641 + -1.2
850,642 - -0.1
850,642 - -0.9
850,865 + -0.5
850,865 + +0.4
850,866 - -0.9
850,866 - -0.3
850,917 + -0.3
850,917 + -0.5
850,917 + -1.0
850,917 + +0.5
850,918 - -2.0
850,918 - -1.0
850,918 - +0.3
850,918 - -2.0
850,918 - -0.9
850,918 - -0.9
850,918 - -0.9
850,930 - -0.3
850,930 - -1.7
850,963 + +0.5
850,964 - -0.1
850,985 - +0.5
850,985 - +0.1
850,993 - -0.2
851,273 + MPMX19_05313 0.16 -0.7
851,273 + MPMX19_05313 0.16 -1.6
851,273 + MPMX19_05313 0.16 -0.6
851,274 - MPMX19_05313 0.17 +0.5

Or see this region's nucleotide sequence