Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00104

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00103 and MPMX19_00104 are separated by 41 nucleotidesMPMX19_00104 and MPMX19_00105 are separated by 306 nucleotides MPMX19_00103: MPMX19_00103 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 109,696 to 110,946 _00103 MPMX19_00104: MPMX19_00104 - 2-oxoglutarate dehydrogenase E1 component, at 110,988 to 113,942 _00104 MPMX19_00105: MPMX19_00105 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 114,249 to 115,124 _00105 Position (kb) 110 111 112 113 114Strain fitness (log2 ratio) -2 -1 0 1at 114.076 kb on - strandat 114.076 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.097 kb on - strandat 114.129 kb on - strandat 114.129 kb on - strandat 114.129 kb on - strandat 114.129 kb on - strandat 114.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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114,076 - -0.4
114,076 - -0.7
114,097 - -0.8
114,097 - -2.0
114,097 - +0.2
114,097 - +0.6
114,097 - -0.5
114,097 - +1.2
114,097 - -0.0
114,097 - -2.0
114,129 - +1.6
114,129 - +0.3
114,129 - -0.1
114,129 - +0.1
114,129 - -0.8

Or see this region's nucleotide sequence