Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05832 and MPMX19_05833 are separated by 53 nucleotides MPMX19_05833 and MPMX19_05834 are separated by 100 nucleotides
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
MPMX19_05833: MPMX19_05833 - Cyclohexadienyl dehydrogenase, at 564,055 to 564,969
_05833
MPMX19_05834: MPMX19_05834 - Hydrogen peroxide-inducible genes activator, at 565,070 to 565,981
_05834
Position (kb) 564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 563.999 kb on + strand at 564.000 kb on - strand at 564.000 kb on - strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.056 kb on + strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 564.057 kb on - strand at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.602 kb on + strand, within MPMX19_05834 at 565.603 kb on - strand, within MPMX19_05834 at 565.603 kb on - strand, within MPMX19_05834 at 565.947 kb on + strand at 565.947 kb on + strand at 565.948 kb on - strand at 565.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 563,999 + -0.9 563,999 + +0.4 563,999 + +0.7 563,999 + -1.0 563,999 + +0.5 564,000 - -2.6 564,000 - -0.3 564,056 + -0.2 564,056 + -0.8 564,056 + -1.3 564,056 + +0.3 564,056 + +0.5 564,056 + -0.5 564,056 + -1.5 564,056 + +1.9 564,056 + +0.5 564,057 - +0.3 564,057 - +0.5 564,057 - +1.0 564,057 - +0.5 564,057 - -1.5 565,602 + MPMX19_05834 0.58 +0.3 565,602 + MPMX19_05834 0.58 -0.5 565,602 + MPMX19_05834 0.58 +0.8 565,602 + MPMX19_05834 0.58 -0.1 565,603 - MPMX19_05834 0.58 -1.3 565,603 - MPMX19_05834 0.58 -1.9 565,947 + +1.9 565,947 + -1.0 565,948 - -0.3 565,948 - -0.0
Or see this region's nucleotide sequence