Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05359 and MPMX19_05360 overlap by 4 nucleotides MPMX19_05360 and MPMX19_05361 are separated by 77 nucleotides MPMX19_05361 and MPMX19_05362 are separated by 107 nucleotides
MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135
_05359
MPMX19_05360: MPMX19_05360 - hypothetical protein, at 36,132 to 36,884
_05360
MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672
_05361
MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160
_05362
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.815 kb on + strand, within MPMX19_05359 at 35.816 kb on - strand, within MPMX19_05359 at 35.816 kb on - strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.842 kb on + strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 35.843 kb on - strand, within MPMX19_05359 at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.073 kb on + strand at 36.074 kb on - strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.144 kb on + strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.145 kb on - strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.204 kb on + strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.205 kb on - strand at 36.325 kb on - strand, within MPMX19_05360 at 36.325 kb on - strand, within MPMX19_05360 at 36.341 kb on + strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.342 kb on - strand, within MPMX19_05360 at 36.393 kb on + strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.394 kb on - strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.501 kb on + strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.502 kb on - strand, within MPMX19_05360 at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.883 kb on - strand at 36.898 kb on - strand at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.460 kb on + strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.461 kb on - strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.471 kb on + strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.472 kb on - strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.595 kb on + strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.596 kb on - strand, within MPMX19_05361 at 37.609 kb on + strand at 37.609 kb on + strand at 37.610 kb on - strand at 37.610 kb on - strand at 37.670 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.683 kb on + strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.684 kb on - strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.691 kb on + strand at 37.692 kb on - strand at 37.692 kb on - strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.728 kb on + strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.729 kb on - strand at 37.821 kb on + strand, within MPMX19_05362 at 37.822 kb on - strand, within MPMX19_05362
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 35,152 + MPMX19_05359 0.23 +0.2 35,152 + MPMX19_05359 0.23 -1.6 35,152 + MPMX19_05359 0.23 -1.8 35,152 + MPMX19_05359 0.23 -1.3 35,152 + MPMX19_05359 0.23 -1.1 35,153 - MPMX19_05359 0.23 +0.4 35,153 - MPMX19_05359 0.23 -0.6 35,153 - MPMX19_05359 0.23 -0.5 35,153 - MPMX19_05359 0.23 -0.3 35,153 - MPMX19_05359 0.23 +0.8 35,153 - MPMX19_05359 0.23 -0.1 35,153 - MPMX19_05359 0.23 -1.1 35,153 - MPMX19_05359 0.23 +0.7 35,153 - MPMX19_05359 0.23 +0.2 35,153 - MPMX19_05359 0.23 -0.8 35,570 + MPMX19_05359 0.56 -1.1 35,570 + MPMX19_05359 0.56 -0.8 35,570 + MPMX19_05359 0.56 -0.6 35,570 + MPMX19_05359 0.56 +1.0 35,570 + MPMX19_05359 0.56 -0.7 35,570 + MPMX19_05359 0.56 +0.2 35,570 + MPMX19_05359 0.56 -0.3 35,571 - MPMX19_05359 0.56 +1.0 35,571 - MPMX19_05359 0.56 -1.3 35,571 - MPMX19_05359 0.56 -1.2 35,571 - MPMX19_05359 0.56 +0.2 35,571 - MPMX19_05359 0.56 -0.8 35,815 + MPMX19_05359 0.75 -0.5 35,815 + MPMX19_05359 0.75 -0.6 35,815 + MPMX19_05359 0.75 +1.2 35,816 - MPMX19_05359 0.75 -1.3 35,816 - MPMX19_05359 0.75 +1.0 35,842 + MPMX19_05359 0.77 -0.0 35,842 + MPMX19_05359 0.77 -0.9 35,842 + MPMX19_05359 0.77 +1.7 35,842 + MPMX19_05359 0.77 +0.0 35,842 + MPMX19_05359 0.77 -0.3 35,843 - MPMX19_05359 0.77 +0.2 35,843 - MPMX19_05359 0.77 -1.3 35,843 - MPMX19_05359 0.77 -1.1 35,843 - MPMX19_05359 0.77 +1.7 35,843 - MPMX19_05359 0.77 +0.5 36,073 + -1.1 36,073 + -0.8 36,073 + +0.9 36,073 + -0.9 36,073 + -1.1 36,073 + -0.3 36,073 + -1.3 36,073 + +0.5 36,074 - -0.6 36,144 + -1.3 36,144 + +2.8 36,144 + -0.1 36,144 + +1.2 36,144 + +0.8 36,144 + +0.8 36,144 + -1.3 36,144 + -0.6 36,144 + -0.3 36,144 + +2.2 36,144 + -1.6 36,145 - -0.3 36,145 - +0.5 36,145 - +0.4 36,145 - +0.8 36,145 - +0.1 36,145 - +0.7 36,204 + -1.3 36,204 + -1.1 36,204 + -0.8 36,204 + -2.1 36,204 + -0.3 36,204 + -0.1 36,204 + -0.1 36,205 - -1.1 36,205 - +1.2 36,205 - +0.4 36,205 - +0.0 36,205 - +0.9 36,205 - +0.2 36,205 - -1.2 36,205 - +0.9 36,205 - -2.2 36,325 - MPMX19_05360 0.26 +0.2 36,325 - MPMX19_05360 0.26 +0.4 36,341 + MPMX19_05360 0.28 -0.8 36,342 - MPMX19_05360 0.28 +1.0 36,342 - MPMX19_05360 0.28 -0.2 36,393 + MPMX19_05360 0.35 +0.1 36,394 - MPMX19_05360 0.35 +0.5 36,394 - MPMX19_05360 0.35 +0.9 36,394 - MPMX19_05360 0.35 -0.6 36,394 - MPMX19_05360 0.35 -0.0 36,394 - MPMX19_05360 0.35 -0.1 36,394 - MPMX19_05360 0.35 +1.0 36,501 + MPMX19_05360 0.49 -0.8 36,501 + MPMX19_05360 0.49 -0.6 36,501 + MPMX19_05360 0.49 +1.8 36,501 + MPMX19_05360 0.49 -1.1 36,501 + MPMX19_05360 0.49 +0.2 36,501 + MPMX19_05360 0.49 +0.2 36,502 - MPMX19_05360 0.49 +1.7 36,502 - MPMX19_05360 0.49 +0.2 36,883 - +0.4 36,883 - -1.1 36,883 - -0.2 36,883 - -0.8 36,883 - +1.2 36,898 - +1.2 37,460 + MPMX19_05361 0.70 +2.1 37,460 + MPMX19_05361 0.70 +2.0 37,460 + MPMX19_05361 0.70 +2.1 37,460 + MPMX19_05361 0.70 +1.7 37,460 + MPMX19_05361 0.70 +3.1 37,460 + MPMX19_05361 0.70 +3.0 37,461 - MPMX19_05361 0.70 +2.7 37,461 - MPMX19_05361 0.70 +2.2 37,461 - MPMX19_05361 0.70 +1.7 37,461 - MPMX19_05361 0.70 +3.4 37,471 + MPMX19_05361 0.72 +3.0 37,471 + MPMX19_05361 0.72 +2.9 37,471 + MPMX19_05361 0.72 +2.1 37,471 + MPMX19_05361 0.72 +2.5 37,472 - MPMX19_05361 0.72 +2.5 37,472 - MPMX19_05361 0.72 +2.5 37,472 - MPMX19_05361 0.72 +3.1 37,472 - MPMX19_05361 0.72 +1.6 37,472 - MPMX19_05361 0.72 +1.8 37,595 + MPMX19_05361 0.89 +2.8 37,595 + MPMX19_05361 0.89 +1.2 37,595 + MPMX19_05361 0.89 +2.1 37,595 + MPMX19_05361 0.89 +2.1 37,595 + MPMX19_05361 0.89 +3.7 37,595 + MPMX19_05361 0.89 +2.9 37,595 + MPMX19_05361 0.89 +0.9 37,595 + MPMX19_05361 0.89 +2.2 37,596 - MPMX19_05361 0.89 +3.2 37,596 - MPMX19_05361 0.89 +1.7 37,596 - MPMX19_05361 0.89 +1.2 37,596 - MPMX19_05361 0.89 +0.6 37,596 - MPMX19_05361 0.89 +2.8 37,609 + +4.4 37,609 + +2.0 37,610 - +1.9 37,610 - +1.9 37,670 + +0.2 37,683 + +0.2 37,683 + -0.6 37,683 + -1.1 37,683 + -0.8 37,683 + -2.0 37,683 + -0.0 37,683 + -0.7 37,683 + -0.3 37,683 + +0.2 37,684 - -0.3 37,684 - -1.1 37,684 - +0.2 37,684 - -0.2 37,691 + -1.1 37,691 + -0.6 37,691 + -0.7 37,692 - -1.6 37,692 - +1.0 37,728 + -0.8 37,728 + -0.8 37,728 + -1.3 37,728 + -0.4 37,728 + -0.1 37,728 + -1.1 37,728 + +0.7 37,728 + +1.2 37,729 - -0.8 37,729 - -0.6 37,729 - -1.1 37,729 - -0.1 37,821 + MPMX19_05362 0.11 -0.1 37,822 - MPMX19_05362 0.11 -0.3
Or see this region's nucleotide sequence