Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04651

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04650 and MPMX19_04651 are separated by 53 nucleotidesMPMX19_04651 and MPMX19_04652 are separated by 2 nucleotides MPMX19_04650: MPMX19_04650 - Polyphosphate:AMP phosphotransferase, at 35,214 to 36,029 _04650 MPMX19_04651: MPMX19_04651 - 3-isopropylmalate dehydratase small subunit 1, at 36,083 to 36,682 _04651 MPMX19_04652: MPMX19_04652 - 3-isopropylmalate dehydratase large subunit, at 36,685 to 38,106 _04652 Position (kb) 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 35.298 kb on + strand, within MPMX19_04650at 35.298 kb on + strand, within MPMX19_04650at 35.298 kb on + strand, within MPMX19_04650at 35.298 kb on + strand, within MPMX19_04650at 35.298 kb on + strand, within MPMX19_04650at 35.299 kb on - strand, within MPMX19_04650at 35.299 kb on - strand, within MPMX19_04650at 35.299 kb on - strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.352 kb on + strand, within MPMX19_04650at 35.353 kb on - strand, within MPMX19_04650at 35.353 kb on - strand, within MPMX19_04650at 35.353 kb on - strand, within MPMX19_04650at 35.353 kb on - strand, within MPMX19_04650at 35.353 kb on - strand, within MPMX19_04650at 35.508 kb on + strand, within MPMX19_04650at 35.508 kb on + strand, within MPMX19_04650at 35.508 kb on + strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.509 kb on - strand, within MPMX19_04650at 35.514 kb on + strand, within MPMX19_04650at 35.514 kb on + strand, within MPMX19_04650at 35.515 kb on - strand, within MPMX19_04650at 35.575 kb on - strand, within MPMX19_04650at 35.575 kb on - strand, within MPMX19_04650at 35.575 kb on - strand, within MPMX19_04650at 35.637 kb on + strand, within MPMX19_04650at 35.637 kb on + strand, within MPMX19_04650at 35.637 kb on + strand, within MPMX19_04650at 35.638 kb on - strand, within MPMX19_04650at 35.638 kb on - strand, within MPMX19_04650at 35.638 kb on - strand, within MPMX19_04650at 35.760 kb on + strand, within MPMX19_04650at 35.760 kb on + strand, within MPMX19_04650at 35.761 kb on - strand, within MPMX19_04650at 35.761 kb on - strand, within MPMX19_04650at 35.761 kb on - strand, within MPMX19_04650at 35.761 kb on - strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.817 kb on + strand, within MPMX19_04650at 35.818 kb on - strand, within MPMX19_04650at 35.818 kb on - strand, within MPMX19_04650at 35.818 kb on - strand, within MPMX19_04650at 35.818 kb on - strand, within MPMX19_04650at 35.818 kb on - strand, within MPMX19_04650at 36.016 kb on + strandat 36.017 kb on - strandat 36.027 kb on + strandat 36.084 kb on + strandat 36.331 kb on + strand, within MPMX19_04651at 36.331 kb on + strand, within MPMX19_04651at 36.332 kb on - strand, within MPMX19_04651at 36.332 kb on - strand, within MPMX19_04651at 36.388 kb on + strand, within MPMX19_04651at 36.388 kb on + strand, within MPMX19_04651at 36.389 kb on - strand, within MPMX19_04651at 36.389 kb on - strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.441 kb on + strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.442 kb on - strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.510 kb on + strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.511 kb on - strand, within MPMX19_04651at 36.571 kb on - strand, within MPMX19_04651at 36.706 kb on + strandat 36.706 kb on + strandat 36.706 kb on + strandat 36.707 kb on - strandat 36.707 kb on - strandat 36.707 kb on - strandat 36.707 kb on - strandat 36.707 kb on - strandat 36.707 kb on - strandat 36.707 kb on - strandat 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.494 kb on - strand, within MPMX19_04652

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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35,298 + MPMX19_04650 0.10 -2.5
35,298 + MPMX19_04650 0.10 -1.7
35,298 + MPMX19_04650 0.10 +0.7
35,298 + MPMX19_04650 0.10 -0.3
35,298 + MPMX19_04650 0.10 -1.7
35,299 - MPMX19_04650 0.10 -0.3
35,299 - MPMX19_04650 0.10 -0.3
35,299 - MPMX19_04650 0.10 -1.3
35,352 + MPMX19_04650 0.17 -1.8
35,352 + MPMX19_04650 0.17 +0.7
35,352 + MPMX19_04650 0.17 -1.8
35,352 + MPMX19_04650 0.17 -2.4
35,352 + MPMX19_04650 0.17 -0.1
35,352 + MPMX19_04650 0.17 -0.9
35,353 - MPMX19_04650 0.17 -0.7
35,353 - MPMX19_04650 0.17 +0.3
35,353 - MPMX19_04650 0.17 -1.3
35,353 - MPMX19_04650 0.17 -2.6
35,353 - MPMX19_04650 0.17 +0.7
35,508 + MPMX19_04650 0.36 -0.5
35,508 + MPMX19_04650 0.36 -0.1
35,508 + MPMX19_04650 0.36 -0.9
35,509 - MPMX19_04650 0.36 -0.8
35,509 - MPMX19_04650 0.36 -1.8
35,509 - MPMX19_04650 0.36 +0.1
35,509 - MPMX19_04650 0.36 -0.5
35,509 - MPMX19_04650 0.36 -1.4
35,509 - MPMX19_04650 0.36 -1.2
35,514 + MPMX19_04650 0.37 +0.5
35,514 + MPMX19_04650 0.37 -0.9
35,515 - MPMX19_04650 0.37 -0.3
35,575 - MPMX19_04650 0.44 +0.3
35,575 - MPMX19_04650 0.44 +0.4
35,575 - MPMX19_04650 0.44 +1.1
35,637 + MPMX19_04650 0.52 -0.0
35,637 + MPMX19_04650 0.52 -0.7
35,637 + MPMX19_04650 0.52 -1.8
35,638 - MPMX19_04650 0.52 -0.3
35,638 - MPMX19_04650 0.52 -0.3
35,638 - MPMX19_04650 0.52 +0.3
35,760 + MPMX19_04650 0.67 -0.1
35,760 + MPMX19_04650 0.67 -0.5
35,761 - MPMX19_04650 0.67 -0.5
35,761 - MPMX19_04650 0.67 -0.1
35,761 - MPMX19_04650 0.67 -0.8
35,761 - MPMX19_04650 0.67 -0.9
35,817 + MPMX19_04650 0.74 +0.4
35,817 + MPMX19_04650 0.74 +0.1
35,817 + MPMX19_04650 0.74 -1.3
35,817 + MPMX19_04650 0.74 +0.9
35,817 + MPMX19_04650 0.74 -0.3
35,817 + MPMX19_04650 0.74 -2.0
35,817 + MPMX19_04650 0.74 +0.7
35,817 + MPMX19_04650 0.74 -2.4
35,817 + MPMX19_04650 0.74 -0.9
35,817 + MPMX19_04650 0.74 -3.1
35,818 - MPMX19_04650 0.74 +0.1
35,818 - MPMX19_04650 0.74 +0.7
35,818 - MPMX19_04650 0.74 +0.3
35,818 - MPMX19_04650 0.74 -1.6
35,818 - MPMX19_04650 0.74 -0.8
36,016 + -0.9
36,017 - -0.7
36,027 + -0.7
36,084 + -0.2
36,331 + MPMX19_04651 0.41 +0.7
36,331 + MPMX19_04651 0.41 -1.5
36,332 - MPMX19_04651 0.41 -0.3
36,332 - MPMX19_04651 0.41 -1.7
36,388 + MPMX19_04651 0.51 +0.1
36,388 + MPMX19_04651 0.51 -0.3
36,389 - MPMX19_04651 0.51 -0.9
36,389 - MPMX19_04651 0.51 +1.1
36,441 + MPMX19_04651 0.60 -0.2
36,441 + MPMX19_04651 0.60 +0.7
36,441 + MPMX19_04651 0.60 -1.1
36,441 + MPMX19_04651 0.60 -1.3
36,441 + MPMX19_04651 0.60 -0.7
36,441 + MPMX19_04651 0.60 -0.5
36,441 + MPMX19_04651 0.60 -1.1
36,441 + MPMX19_04651 0.60 -0.1
36,441 + MPMX19_04651 0.60 +0.7
36,442 - MPMX19_04651 0.60 +0.8
36,442 - MPMX19_04651 0.60 -2.5
36,442 - MPMX19_04651 0.60 -1.3
36,442 - MPMX19_04651 0.60 -1.1
36,442 - MPMX19_04651 0.60 +2.7
36,442 - MPMX19_04651 0.60 -0.3
36,442 - MPMX19_04651 0.60 -0.3
36,510 + MPMX19_04651 0.71 +2.2
36,510 + MPMX19_04651 0.71 +1.7
36,510 + MPMX19_04651 0.71 -0.7
36,510 + MPMX19_04651 0.71 -0.3
36,510 + MPMX19_04651 0.71 +0.7
36,510 + MPMX19_04651 0.71 -1.7
36,510 + MPMX19_04651 0.71 -2.7
36,511 - MPMX19_04651 0.71 +0.1
36,511 - MPMX19_04651 0.71 -0.3
36,511 - MPMX19_04651 0.71 +0.3
36,511 - MPMX19_04651 0.71 -0.5
36,511 - MPMX19_04651 0.71 -0.5
36,511 - MPMX19_04651 0.71 +0.2
36,511 - MPMX19_04651 0.71 -0.2
36,511 - MPMX19_04651 0.71 +0.7
36,511 - MPMX19_04651 0.71 -1.1
36,511 - MPMX19_04651 0.71 -1.9
36,571 - MPMX19_04651 0.81 -1.2
36,706 + -0.2
36,706 + -1.9
36,706 + -1.8
36,707 - -2.2
36,707 - -0.5
36,707 - -0.3
36,707 - -0.5
36,707 - -1.1
36,707 - -0.3
36,707 - -1.0
37,127 + MPMX19_04652 0.31 -0.7
37,127 + MPMX19_04652 0.31 -0.3
37,127 + MPMX19_04652 0.31 -1.5
37,127 + MPMX19_04652 0.31 +0.1
37,127 + MPMX19_04652 0.31 -0.5
37,127 + MPMX19_04652 0.31 +1.2
37,127 + MPMX19_04652 0.31 -0.9
37,127 + MPMX19_04652 0.31 -1.3
37,127 + MPMX19_04652 0.31 +0.1
37,127 + MPMX19_04652 0.31 -0.7
37,127 + MPMX19_04652 0.31 -1.4
37,127 + MPMX19_04652 0.31 +0.3
37,128 - MPMX19_04652 0.31 -1.8
37,128 - MPMX19_04652 0.31 -1.8
37,128 - MPMX19_04652 0.31 -1.1
37,128 - MPMX19_04652 0.31 +0.1
37,128 - MPMX19_04652 0.31 -0.9
37,128 - MPMX19_04652 0.31 +1.2
37,128 - MPMX19_04652 0.31 -1.9
37,128 - MPMX19_04652 0.31 -0.8
37,128 - MPMX19_04652 0.31 -1.5
37,128 - MPMX19_04652 0.31 +1.2
37,128 - MPMX19_04652 0.31 -0.9
37,128 - MPMX19_04652 0.31 -1.1
37,128 - MPMX19_04652 0.31 -0.3
37,128 - MPMX19_04652 0.31 -1.1
37,128 - MPMX19_04652 0.31 -2.3
37,494 - MPMX19_04652 0.57 +0.3

Or see this region's nucleotide sequence