Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00243 and MPMX19_00244 overlap by 4 nucleotides MPMX19_00244 and MPMX19_00245 are separated by 76 nucleotides MPMX19_00245 and MPMX19_00246 are separated by 99 nucleotides MPMX19_00246 and MPMX19_00247 are separated by 198 nucleotides
MPMX19_00243: MPMX19_00243 - ECF RNA polymerase sigma factor SigJ, at 244,502 to 245,407
_00243
MPMX19_00244: MPMX19_00244 - hypothetical protein, at 245,404 to 245,778
_00244
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
MPMX19_00246: MPMX19_00246 - hypothetical protein, at 246,689 to 247,054
_00246
MPMX19_00247: MPMX19_00247 - Ferric uptake regulation protein, at 247,253 to 247,690
_00247
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.913 kb on + strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 244.914 kb on - strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.084 kb on + strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.085 kb on - strand, within MPMX19_00243 at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.360 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.405 kb on + strand at 245.405 kb on + strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.406 kb on - strand at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.522 kb on + strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.523 kb on - strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.738 kb on + strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.739 kb on - strand, within MPMX19_00244 at 245.808 kb on - strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.822 kb on + strand at 245.823 kb on - strand at 245.823 kb on - strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.845 kb on + strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.846 kb on - strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.856 kb on + strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.857 kb on - strand at 245.881 kb on + strand at 245.882 kb on - strand at 245.882 kb on - strand at 246.599 kb on + strand at 246.600 kb on - strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.248 kb on + strand at 247.248 kb on + strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.267 kb on + strand at 247.268 kb on - strand at 247.296 kb on + strand at 247.296 kb on + strand at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.344 kb on - strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.446 kb on + strand, within MPMX19_00247 at 247.519 kb on - strand, within MPMX19_00247
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 244,913 + MPMX19_00243 0.45 -0.4 244,914 - MPMX19_00243 0.45 +0.6 244,914 - MPMX19_00243 0.45 -1.0 244,914 - MPMX19_00243 0.45 -0.7 245,084 + MPMX19_00243 0.64 -1.4 245,084 + MPMX19_00243 0.64 +0.0 245,084 + MPMX19_00243 0.64 -0.9 245,084 + MPMX19_00243 0.64 -1.4 245,084 + MPMX19_00243 0.64 -1.9 245,084 + MPMX19_00243 0.64 +0.6 245,084 + MPMX19_00243 0.64 +0.9 245,084 + MPMX19_00243 0.64 -0.4 245,085 - MPMX19_00243 0.64 -1.7 245,085 - MPMX19_00243 0.64 +2.0 245,085 - MPMX19_00243 0.64 +0.6 245,085 - MPMX19_00243 0.64 +0.3 245,085 - MPMX19_00243 0.64 -0.4 245,085 - MPMX19_00243 0.64 -0.4 245,085 - MPMX19_00243 0.64 -1.9 245,085 - MPMX19_00243 0.64 -2.3 245,085 - MPMX19_00243 0.64 -0.7 245,360 + -1.7 245,360 + -1.0 245,360 + +0.6 245,360 + -1.3 245,360 + -1.0 245,360 + -0.7 245,360 + +0.0 245,360 + -1.1 245,360 + -0.6 245,361 - -1.0 245,361 - -1.2 245,361 - +0.6 245,361 - -2.1 245,361 - +1.0 245,361 - +0.0 245,361 - -0.4 245,405 + -1.2 245,405 + +0.0 245,406 - +0.4 245,406 - -0.7 245,406 - +0.8 245,406 - -1.7 245,522 + MPMX19_00244 0.31 +1.0 245,522 + MPMX19_00244 0.31 -0.4 245,522 + MPMX19_00244 0.31 +1.6 245,523 - MPMX19_00244 0.32 -1.9 245,523 - MPMX19_00244 0.32 +0.3 245,738 + MPMX19_00244 0.89 -0.6 245,738 + MPMX19_00244 0.89 -0.9 245,738 + MPMX19_00244 0.89 +1.6 245,739 - MPMX19_00244 0.89 -0.3 245,739 - MPMX19_00244 0.89 -0.1 245,739 - MPMX19_00244 0.89 -2.6 245,739 - MPMX19_00244 0.89 +0.6 245,739 - MPMX19_00244 0.89 -0.8 245,808 - -2.6 245,822 + +1.0 245,822 + -0.1 245,822 + -0.6 245,822 + +0.6 245,822 + -0.5 245,822 + +0.3 245,822 + -0.1 245,823 - -0.3 245,823 - -1.4 245,845 + -0.4 245,845 + -0.7 245,845 + -2.3 245,845 + +0.6 245,845 + -1.0 245,845 + -1.7 245,845 + -0.6 245,845 + -0.4 245,845 + +0.0 245,845 + -1.6 245,846 - -1.5 245,846 - -0.1 245,846 - -0.4 245,846 - -1.4 245,846 - +0.0 245,846 - -1.2 245,846 - -0.4 245,846 - +0.4 245,856 + -1.7 245,856 + -0.4 245,856 + -0.4 245,856 + -1.0 245,856 + +0.6 245,856 + -1.6 245,856 + -0.2 245,856 + -1.0 245,856 + -0.4 245,856 + +0.2 245,857 - -1.2 245,857 - +0.0 245,857 - +0.6 245,857 - -2.4 245,857 - +1.3 245,857 - -0.7 245,857 - -0.4 245,857 - +0.0 245,857 - +0.6 245,881 + -0.2 245,882 - -0.7 245,882 - -0.4 246,599 + +0.6 246,600 - +0.6 247,246 + -0.6 247,246 + +0.3 247,246 + -1.5 247,246 + -0.3 247,246 + +1.0 247,246 + -2.0 247,246 + +1.2 247,246 + -0.3 247,247 - +0.6 247,247 - -0.4 247,247 - -1.6 247,247 - -0.7 247,247 - -0.4 247,247 - -1.7 247,247 - -1.4 247,247 - +1.3 247,247 - -0.9 247,247 - -1.0 247,247 - -0.7 247,248 + +0.3 247,248 + -1.3 247,249 - +0.0 247,249 - -1.8 247,249 - +0.0 247,250 + -0.1 247,250 + +0.0 247,250 + -0.3 247,250 + +0.6 247,250 + -1.6 247,250 + +0.5 247,250 + -0.1 247,250 + -1.7 247,250 + -2.0 247,250 + -0.7 247,250 + -0.7 247,250 + -2.1 247,250 + +2.6 247,250 + +0.1 247,251 - -0.2 247,251 - -1.0 247,251 - -1.6 247,254 + +0.9 247,254 + -1.8 247,254 + -1.3 247,254 + -0.6 247,254 + -1.1 247,254 + +0.9 247,254 + +0.6 247,254 + +0.0 247,254 + +0.6 247,254 + -0.4 247,254 + -1.7 247,254 + -1.0 247,254 + +0.0 247,254 + -0.5 247,254 + -0.4 247,254 + -0.5 247,254 + -0.6 247,255 - -1.9 247,255 - -0.7 247,255 - -0.2 247,255 - +0.0 247,255 - +0.4 247,255 - -1.6 247,255 - -0.4 247,255 - -2.0 247,255 - -1.3 247,255 - -0.7 247,267 + -1.0 247,268 - -1.6 247,296 + -0.6 247,296 + +1.2 247,297 - MPMX19_00247 0.10 -0.9 247,297 - MPMX19_00247 0.10 -2.0 247,297 - MPMX19_00247 0.10 -0.4 247,326 + MPMX19_00247 0.17 -0.4 247,326 + MPMX19_00247 0.17 +1.1 247,343 + MPMX19_00247 0.21 -0.2 247,343 + MPMX19_00247 0.21 -0.2 247,344 - MPMX19_00247 0.21 -0.6 247,409 + MPMX19_00247 0.36 +0.0 247,409 + MPMX19_00247 0.36 -0.4 247,409 + MPMX19_00247 0.36 -0.0 247,409 + MPMX19_00247 0.36 -0.4 247,409 + MPMX19_00247 0.36 -0.7 247,409 + MPMX19_00247 0.36 -0.7 247,409 + MPMX19_00247 0.36 -0.7 247,409 + MPMX19_00247 0.36 +0.6 247,409 + MPMX19_00247 0.36 -0.8 247,409 + MPMX19_00247 0.36 +1.2 247,409 + MPMX19_00247 0.36 +1.6 247,409 + MPMX19_00247 0.36 +0.6 247,410 - MPMX19_00247 0.36 -1.4 247,410 - MPMX19_00247 0.36 -0.4 247,410 - MPMX19_00247 0.36 +0.3 247,410 - MPMX19_00247 0.36 -1.4 247,446 + MPMX19_00247 0.44 -0.4 247,519 - MPMX19_00247 0.61 -1.0
Or see this region's nucleotide sequence